View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_low_20 (Length: 379)

Name: NF2061_low_20
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_low_20
NF2061_low_20
[»] chr3 (3 HSPs)
chr3 (66-361)||(25516707-25516999)
chr3 (207-353)||(21156297-21156439)
chr3 (314-361)||(29100130-29100177)
[»] chr4 (4 HSPs)
chr4 (242-361)||(37781762-37781880)
chr4 (243-361)||(873596-873713)
chr4 (242-316)||(54867082-54867157)
chr4 (240-303)||(3991920-3991984)
[»] chr5 (4 HSPs)
chr5 (207-353)||(5611010-5611152)
chr5 (210-336)||(30899728-30899854)
chr5 (192-321)||(34842457-34842582)
chr5 (209-320)||(28537489-28537604)
[»] chr2 (12 HSPs)
chr2 (208-360)||(16388551-16388702)
chr2 (207-316)||(2869818-2869927)
chr2 (206-333)||(3277869-3277993)
chr2 (240-355)||(28770859-28770974)
chr2 (248-326)||(5699691-5699769)
chr2 (240-361)||(18674480-18674600)
chr2 (235-303)||(8390286-8390354)
chr2 (204-294)||(16388312-16388399)
chr2 (240-296)||(39482828-39482884)
chr2 (246-319)||(20522124-20522196)
chr2 (242-303)||(23078608-23078669)
chr2 (192-303)||(13569181-13569289)
[»] scaffold0076 (1 HSPs)
scaffold0076 (264-361)||(16067-16165)
[»] chr6 (7 HSPs)
chr6 (150-338)||(30519123-30519307)
chr6 (264-360)||(33721639-33721735)
chr6 (240-322)||(28301082-28301164)
chr6 (240-322)||(28510909-28510991)
chr6 (242-355)||(9036160-9036272)
chr6 (242-303)||(22963599-22963660)
chr6 (242-303)||(23824733-23824794)
[»] chr7 (3 HSPs)
chr7 (207-361)||(28617304-28617457)
chr7 (240-303)||(46516447-46516510)
chr7 (240-316)||(2647820-2647896)
[»] chr1 (4 HSPs)
chr1 (242-316)||(29651710-29651784)
chr1 (240-348)||(48382575-48382683)
chr1 (248-360)||(35109616-35109727)
chr1 (259-326)||(32737110-32737177)
[»] scaffold0148 (1 HSPs)
scaffold0148 (242-361)||(10628-10747)
[»] chr8 (3 HSPs)
chr8 (229-319)||(6813567-6813658)
chr8 (245-302)||(5990699-5990756)
chr8 (275-328)||(34477330-34477383)
[»] scaffold0006 (1 HSPs)
scaffold0006 (242-316)||(2392-2465)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 66 - 361
Target Start/End: Original strand, 25516707 - 25516999
Alignment:
Q  66 ccagcagagcgaatagcagatatagatgtatatactttcatttttctctttacaaactactacaactacattattaatagaatttgttgtgaattggaac 165  Q
    ||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25516707 ccagcggagcgaatagcagatatacatttatatactttcatttgtctctttacaaactactacaactacattattaatagaatttgttgtgaatttgaac 25516806  T
Q  166 aggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagactta 265  Q
     |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  25516807 tggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagtagtctcaaat---aacaacaacaaaaaatagactta 25516903  T
Q  266 gatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttc 361  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  25516904 gatcgaagtgtgaaacaacaccacaaacatatttaaagtaacaaggataagaaagaagagagggaaaacaacacaccaatagtgtttacccagttc 25516999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 353
Target Start/End: Original strand, 21156297 - 21156439
Alignment:
Q  207 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 306  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  21156297 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 21156393  T
Q  307 caaggataagaaagaagagagggaaaacaacataccaatattattta 353  Q
    ||| ||||||||||||| ||  |||||||||| ||||||||| ||||    
T  21156394 caaagataagaaagaaggga-agaaaacaacacaccaatattgttta 21156439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 29100130 - 29100177
Alignment:
Q  314 aagaaagaagagagggaaaacaacataccaatattatttacccagttc 361  Q
    |||||||||||||  |||||||||| ||||||||| ||||||||||||    
T  29100130 aagaaagaagagaaagaaaacaacacaccaatattgtttacccagttc 29100177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 242 - 361
Target Start/End: Original strand, 37781762 - 37781880
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatac 341  Q
    |||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||| || |||  |||||||||| ||    
T  37781762 caacaacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataataga-agaaaacaacaaac 37781860  T
Q  342 caatattatttacccagttc 361  Q
    ||||||| ||||||||||||    
T  37781861 caatattgtttacccagttc 37781880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 873713 - 873596
Alignment:
Q  243 aacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatacc 342  Q
    ||||||||||| |||  |||||| ||| ||||||||||||||||||||| ||||||||||  ||| | ||||||||| |||| | || |||||||| |||    
T  873713 aacaacaacaacaaactgacttaaatctaagtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaaacaagataagg-aaacaacacacc 873615  T
Q  343 aatattatttacccagttc 361  Q
    |||||||||||| ||||||    
T  873614 aatattatttactcagttc 873596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 54867082 - 54867157
Alignment:
Q  242 caacaacaacaaaaaat-agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 316  Q
    ||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||||| || ||||||    
T  54867082 caacaacaacaaaaaaacagacatagatctaagtgtagagcaacaccacaagcataatcaaagtaataaagataag 54867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 3991920 - 3991984
Alignment:
Q  240 aacaacaacaacaaaaaataga-cttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||||||||||||| ||| | | |||||||| ||||||||| |||||| ||||||||||| ||||    
T  3991920 aacaacaacaacaacaaacaaagcttagatctaagtgtgaagcaacactacaagcatatttaaag 3991984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 353
Target Start/End: Original strand, 5611010 - 5611152
Alignment:
Q  207 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 306  Q
    |||||||||||||| ||||||||||||| ||  ||||| || |||||| ||   || |||||| ||| |||||||||||||| ||| |||||||||| ||    
T  5611010 aagtagtaatcaatgagtaaagtagtcttaagcaacaaaaataacaaacaa---acctagatctaagagtgaaacaacaccataagaatattcaaagcaa 5611106  T
Q  307 caaggataagaaagaagagagggaaaacaacataccaatattattta 353  Q
    ||| ||||||||||||| ||  |||||||||| ||||||||| ||||    
T  5611107 caaagataagaaagaaggga-agaaaacaacacaccaatattgttta 5611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 30899728 - 30899854
Alignment:
Q  210 tagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaa 309  Q
    ||||||||||| || ||||||| |||||  |||||||||||||| | |||||| |||||| |||||| || |||||||||||| |||  ||||  |||||    
T  30899728 tagtaatcaatgagcaaagtagcctcaagcaacaacaacaacaacacatagacctagatcaaagtgttaagcaacaccacaagtataaccaaaacaacaa 30899827  T
Q  310 ggataagaaagaagagagggaaaacaa 336  Q
     ||||  |||||||||| | |||||||    
T  30899828 agatacaaaagaagagaagaaaaacaa 30899854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 321
Target Start/End: Original strand, 34842457 - 34842582
Alignment:
Q  192 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 291  Q
    ||||| ||||| || ||||||||||||| | ||||||||| |||||  | ||||||||| ||| ||   || |||||| ||||||||| |||||||||||    
T  34842457 tgtgtggagtaaaggaagtagtaatcaaga-gtaaagtagcctcaagcagcaacaacaataaacaa---acctagatctaagtgtgaagcaacaccacaa 34842552  T
Q  292 gcatattcaaagtaacaaggataagaaaga 321  Q
    |||||| | ||| ||||| |||||||||||    
T  34842553 gcatatccgaagcaacaaagataagaaaga 34842582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 28537489 - 28537604
Alignment:
Q  209 gtagtaatcaataagtaaagtagtctcaa---ataacaacaacaac-aaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagt 304  Q
    |||||||||||| ||||||||||||||||   | |||||||||||| |||||| |||| || ||| |||||| ||||| |||||||| |||| ||||| |    
T  28537489 gtagtaatcaatgagtaaagtagtctcaagcaacaacaacaacaacaaaaaaacagacata-atctaagtgtaaaacagcaccacaaacataatcaaaat 28537587  T
Q  305 -aacaaggataagaaag 320  Q
     ||||| ||||||||||    
T  28537588 caacaaagataagaaag 28537604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 16388702 - 16388551
Alignment:
Q  208 agtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaac 307  Q
    ||||||||||||| ||||||||||||||||  | || ||||||||| ||| |||| |||||  | ||||||| |||||| | |||||||| ||||| ||     
T  16388702 agtagtaatcaatgagtaaagtagtctcaagcagcagcaacaacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaat 16388603  T
Q  308 aaggataagaaagaagagagggaaaacaacataccaatattatttacccagtt 360  Q
    || ||||||| |||| ||  ||||||||||| ||||||||| |||||||||||    
T  16388602 aaagataagagagaa-aggaggaaaacaacacaccaatattgtttacccagtt 16388551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 2869927 - 2869818
Alignment:
Q  207 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaa 306  Q
    ||||||| |||||| ||||||||||  ||||| |||||||||||||| |||||||| || ||| ||||||  | |||||||| |||||||||||||| ||    
T  2869927 aagtagtgatcaatgagtaaagtagcatcaaacaacaacaacaacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagcaa 2869828  T
Q  307 caaggataag 316  Q
    ||| ||||||    
T  2869827 caaagataag 2869818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 3277869 - 3277993
Alignment:
Q  206 aaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagta 305  Q
    ||||||||||||||| || |||||| || |||  ||||||||||||   |||||||  |||||| ||||||||| |||||| |||| ||||||||||| |    
T  3277869 aaagtagtaatcaattagcaaagtaatcacaagaaacaacaacaac---aaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagca 3277965  T
Q  306 acaaggataagaaagaagagagggaaaa 333  Q
    | || ||||||||| |||||||||||||    
T  3277966 aaaaagataagaaataagagagggaaaa 3277993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 28770974 - 28770859
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacat 339  Q
    ||||||||| |||| |||||||| |||||| ||||||||| |||||||||||||||| |||||| || ||  |||| ||||||||||  | |||||| |     
T  28770974 aacaacaactacaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaagac 28770875  T
Q  340 accaatattatttacc 355  Q
    ||||||||| ||||||    
T  28770874 accaatattttttacc 28770859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 5699691 - 5699769
Alignment:
Q  248 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 326  Q
    |||||| |||||||| |||||| |||||| || ||||||||||||| ||||||||| | ||| ||||||| | ||||||    
T  5699691 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaacgataagataaaagaga 5699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 18674600 - 18674480
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacat 339  Q
    ||||||||||| || ||| |||| |||||  |||||||||  |||||||| ||||||||| ||  ||||| ||||||||| ||||||  |||||||| |     
T  18674600 aacaacaacaataacaaacagacctagatttaagtgtgaagtaacaccacgagcatattcgaaacaacaaagataagaaa-aagagaaagaaaacaagac 18674502  T
Q  340 accaatattatttacccagttc 361  Q
    | ||||||| |||| |||||||    
T  18674501 atcaatattgtttatccagttc 18674480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 8390354 - 8390286
Alignment:
Q  235 caaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||| |||||||||||||||||  |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  8390354 caaacaacaacaacaacaaaaaccagacctagatctaagtgtagagcaacaccacaagcataatcaaag 8390286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 16388312 - 16388399
Alignment:
Q  204 agaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagca 294  Q
    ||||||||||||||||| | ||||||||||||||  | ||||||||||||| ||   || || ||  |||||||||||||||| |||||||    
T  16388312 agaaagtagtaatcaatgaataaagtagtctcaagcagcaacaacaacaaacaa---acatatatataagtgtgaaacaacactacaagca 16388399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 39482828 - 39482884
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcata 296  Q
    |||||||||||||||||| |||| || ||| ||||||  ||||||||||||||||||    
T  39482828 aacaacaacaacaaaaaacagacctaaatctaagtgtagaacaacaccacaagcata 39482884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 20522124 - 20522196
Alignment:
Q  246 aacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 319  Q
    |||||||||||| |||| |||||| ||||||  | |||||||||||||||| |||||| || || |||||||||    
T  20522124 aacaacaaaaaa-agacatagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagaaa 20522196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 23078669 - 23078608
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||||||||||||||| | || |||||| ||||||  | |||||||||||||||| ||||||    
T  23078669 caacaacaacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaag 23078608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 13569181 - 13569289
Alignment:
Q  192 tgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaa 291  Q
    ||||| ||||| || |||| |||||||||  ||||||| ||||| ||  ||||||||||||||||| || |||||||| |||| |  |  ||||||||||    
T  13569181 tgtgtggagtaaaggaagtggtaatcaatgtgtaaagt-gtctccaa--acaacaacaacaaaaaacaggcttagatctaagtatagagaaacaccacaa 13569277  T
Q  292 gcatattcaaag 303  Q
    ||||| ||||||    
T  13569278 gcataatcaaag 13569289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 16165 - 16067
Alignment:
Q  264 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggat-aagaaagaagagagggaaaacaacataccaatattatttacccagttc 361  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||||  || | ||||||||| ||||||||||||||||||||||    
T  16165 tagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaagaaaaacaacacaccaatattatttacccagttc 16067  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 338
Target Start/End: Complemental strand, 30519307 - 30519123
Alignment:
Q  150 tgttgtgaattggaacaggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagtagtctcaaataacaacaaca 249  Q
    ||||||||| | |||||  |||| |||||||||||| || | ||||| ||| | ||||| ||||||||||| |  ||| ||||||||||   ||||||||    
T  30519307 tgttgtgaaattgaacaaataatcataccaataaat-ttaaatgtgtggagcaaagaaaatagtaatcaatgatcaaaatagtctcaaa---caacaaca 30519212  T
Q  250 acaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaaca 338  Q
    |||| ||| | | ||||||  ||||||||| |||||||| || |||||| |||| ||||| ||||||||| ||||||  ||||||||||    
T  30519211 acaacaaacatatttagatttaagtgtgaagcaacaccataaacatatttaaagcaacaaagataagaaataagagaaagaaaacaaca 30519123  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 33721735 - 33721639
Alignment:
Q  264 tagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacataccaatattatttacccagtt 360  Q
    |||||| |||||||||||| |||||||| ||||||||||| ||||| ||||||| ||||  || | ||||||||| |||||||||| ||| ||||||    
T  33721735 tagatctaagtgtgaaacatcaccacaaacatattcaaagcaacaaagataagagagaaaggaagaaaaacaacacaccaatattacttatccagtt 33721639  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 28301164 - 28301082
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 322  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28301164 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28301082  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 28510909 - 28510991
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaa 322  Q
    |||||||| ||||| ||| | || |||||||||||||||| |||||| |||| ||||||||||| ||||  ||||||||||||    
T  28510909 aacaacaagaacaataaacatacctagatcgaagtgtgaagcaacactacaaacatattcaaagaaacagagataagaaagaa 28510991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 9036160 - 9036272
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatac 341  Q
    |||||||||||| ||| | |  |||||| ||||||||| |||  ||||||  ||| |||||  ||||| ||||||||||||||||  |||||||||| ||    
T  9036160 caacaacaacaacaaacatatctagatctaagtgtgaagcaat-ccacaattataatcaaaacaacaaagataagaaagaagagaaagaaaacaacacac 9036258  T
Q  342 caatattatttacc 355  Q
     |||||||||||||    
T  9036259 taatattatttacc 9036272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 22963599 - 22963660
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  22963599 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 22963660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 23824794 - 23824733
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||| ||||||    
T  23824794 caacaacaacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaag 23824733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 361
Target Start/End: Complemental strand, 28617457 - 28617304
Alignment:
Q  207 aagtagtaatcaataagtaaagtagtctcaaataacaacaacaacaaaaaatagacttagatcgaagtgtgaaa-caacaccacaagcatattcaaagta 305  Q
    |||| ||||||||| |||||||||| |||||  ||||| ||||||||||  ||||| ||  ||  || || ||| ||||||||||||||||||||||| |    
T  28617457 aagtggtaatcaatgagtaaagtagcctcaagaaacaagaacaacaaaa--tagacctaagtcttagagtaaaagcaacaccacaagcatattcaaagca 28617360  T
Q  306 acaaggataagaaagaagagagggaaaacaacataccaatattatttacccagttc 361  Q
    |||| |||||| |||||  || | |||  |||| ||||||||| ||||||||||||    
T  28617359 acaaagataagcaagaaaggaagaaaacaaacacaccaatattgtttacccagttc 28617304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 46516510 - 46516447
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaag 303  Q
    |||||||||||||||||| ||||||| ||| |||||| || |||||||| ||||||| ||||||    
T  46516510 aacaacaacaacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaag 46516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 2647896 - 2647820
Alignment:
Q  240 aacaacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 316  Q
    |||||||||||||||||| |||| || ||| |||| |  | |||||||||||||||| |||||| || || ||||||    
T  2647896 aacaacaacaacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagcaataaagataag 2647820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 29651710 - 29651784
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 316  Q
    |||||||||||||||| ||||||||||| ||||||  | |||||||||||||||| |||||| || || ||||||    
T  29651710 caacaacaacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataag 29651784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 48382683 - 48382575
Alignment:
Q  240 aacaacaac-aacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataa-gaaagaagagagggaaaacaac 337  Q
    ||||||||| || ||||||||||| |||||| ||||||||| ||||||||||| |||| | |||| ||||| |||||  ||||||||||   ||||||||    
T  48382683 aacaacaaccaaaaaaaaatagacctagatctaagtgtgaagcaacaccacaaacataattaaagcaacaaagataataaaagaagaga--caaaacaac 48382586  T
Q  338 ataccaatatt 348  Q
    | |||||||||    
T  48382585 acaccaatatt 48382575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 35109727 - 35109616
Alignment:
Q  248 caacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacataccaatat 347  Q
    |||||| ||| |||| |||||| ||||| | ||||||||||||| |||| | |||| ||||| || |||||||||||||  | |||||||| ||| ||||    
T  35109727 caacaacaaacagacctagatctaagtgcggaacaacaccacaaacataattaaagaaacaaagagaagaaagaagagaaag-aaacaacacaccgatat 35109629  T
Q  348 tatttacccagtt 360  Q
    | ||||| |||||    
T  35109628 tgtttactcagtt 35109616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 32737177 - 32737110
Alignment:
Q  259 agacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagaga 326  Q
    ||||||||||| ||||||||| |||||||||||  ||| ||||||  |||| || |||||||||||||    
T  32737177 agacttagatctaagtgtgaagcaacaccacaaatataatcaaagctacaatgaaaagaaagaagaga 32737110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 361
Target Start/End: Original strand, 10628 - 10747
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagggaaaacaacatac 341  Q
    |||||||||||||||| |||| || ||| ||||||  | |||||||||||||||| |||||| || || |||||| ||  | |||| | ||  |||| ||    
T  10628 caacaacaacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagcaataaagataagcaatgaaagagaggaacaaacacac 10727  T
Q  342 caatattatttacccagttc 361  Q
    ||| |||||| |||||||||    
T  10728 caagattattgacccagttc 10747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 6813567 - 6813658
Alignment:
Q  229 tagtctcaaataacaacaacaacaa-aaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataagaaa 319  Q
    |||||||||  |||||||||||||| ||||||||||||  ||  |||||  ||||||| |||||||||| |||||| || || |||||||||    
T  6813567 tagtctcaatcaacaacaacaacaacaaaatagacttaagtcttagtgtagaacaacatcacaagcataatcaaagcaataaagataagaaa 6813658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 5990756 - 5990699
Alignment:
Q  245 caacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaa 302  Q
    ||||||||| |||||||| || ||| ||||||  ||||| ||||||||||||||||||    
T  5990756 caacaacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaa 5990699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 34477383 - 34477330
Alignment:
Q  275 gtgaaacaacaccacaagcatattcaaagtaacaaggataagaaagaagagagg 328  Q
    |||||||||||| |||| |||| |||||| || || ||||||||||||||||||    
T  34477383 gtgaaacaacactacaaacatagtcaaagcaataaagataagaaagaagagagg 34477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 2392 - 2465
Alignment:
Q  242 caacaacaacaaaaaatagacttagatcgaagtgtgaaacaacaccacaagcatattcaaagtaacaaggataag 316  Q
    |||||||||||||||  |||| |||||| ||||||  |||||||||||||||||| |||||| || || ||||||    
T  2392 caacaacaacaaaaac-agacctagatctaagtgtagaacaacaccacaagcataatcaaagcaataaagataag 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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