View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_22 (Length: 360)
Name: NF2061_low_22
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 46549911 - 46550254
Alignment:
| Q |
1 |
ttcgttgcttcaccaccagacattttctgaagtctatggcaagttatttgccgtgtgatgtgtgtttgaattacatgtggtacattctttttaagttatt |
100 |
Q |
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| T |
46549911 |
ttcgttacttcaccaccagacattttctgaagtctagggcaagttatttgccgtgtgatgtgtgtttgaattacatgtggtacattctttttaagttatt |
46550010 |
T |
|
| Q |
101 |
tatgcttaaactccaaagttgaatcacgtcatatttgggcgaaaacacattctgaagttgttttctttaagtgtgtataagttttgctgtagtgttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46550011 |
tatgcttaaactccaaagttgaatcacgtcatatttgggcgaaaacacattctgtagttgttttctttaagtgtgtataagttttgctgtagtgttttca |
46550110 |
T |
|
| Q |
201 |
atgcatgattcaccgagtttgagtttttcttgtaaattgtcatggttttattttgagttgcacatttttaccctcactgttgattataaaattttagttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46550111 |
atgcatgattcaccgagtttgagtttttcttgtaaattgtcatggttttattttgagttgcacatttttaccctcactgttgattataaaattttagttg |
46550210 |
T |
|
| Q |
301 |
ttcttttatatttgattagatgaacatatgattcttacagacac |
344 |
Q |
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| T |
46550211 |
ttcttttatatttgattagatgaacatatgattcttacagacac |
46550254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 1026596 - 1026755
Alignment:
| Q |
182 |
ttttgctgtagtgttttcaatgcatgattcaccgagtttgagtttttcttgtaaattgtcatggttttattttgagttgcacatttttaccctcactgtt |
281 |
Q |
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| T |
1026596 |
ttttgctatagtgttttcaatgcatgattcaccgagtttgagtttttcttgtaaattgtcatggtttgattttgagttgcgcatttttaccctcactgtt |
1026695 |
T |
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| Q |
282 |
gattataaaattttagttgttcttttatatttgattagatgaacatatgattcttacagacac |
344 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1026696 |
gattataaaatttta---gttcttttatatttgattagatgatattatgattcttacagacac |
1026755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 1026466 - 1026598
Alignment:
| Q |
1 |
ttcgttgcttcaccaccagacattttctgaagtctat--ggcaa-gttatttgccgtgtgatgtgtgtttgaattacatgtggtacattctttttaagtt |
97 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||| |
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| T |
1026466 |
ttcgttacttcaccaccagacattttctgaagtctatatggcaaagttatttgc-------tgtgtgtttgaattacatatggtacattccttttaagtt |
1026558 |
T |
|
| Q |
98 |
atttatgcttaaactccaaag-ttgaatcacgtcatattt |
136 |
Q |
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| T |
1026559 |
attgatgcttaaactccaaagtttgaatctcgtcatattt |
1026598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 344
Target Start/End: Original strand, 40828398 - 40828552
Alignment:
| Q |
190 |
tagtgttttcaatgcatgattcaccgagtttgagtttttcttgtaaattgtcatggttttattttgagttgcacatttttaccctcactgttgattataa |
289 |
Q |
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||||||||||||||| ||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40828398 |
tagtgttttcaatgcgtgacagaccgtggttgagttttgcttgtaaattgtcatggttttattttgagttgcacatgattaccctcatcgttgattataa |
40828497 |
T |
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| Q |
290 |
aattttagttgttcttttatatttgattagatgaacatatgattcttacagacac |
344 |
Q |
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|| || |||| |||||||||||||| ||| | || ||||||| ||||||||| |
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| T |
40828498 |
aagctttgttgctcttttatatttgactagcttgtcacatgattcctacagacac |
40828552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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