View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_23 (Length: 345)
Name: NF2061_low_23
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 35364471 - 35364790
Alignment:
| Q |
12 |
tatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttg |
111 |
Q |
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| T |
35364471 |
tatactcattggagccattcaagatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttg |
35364570 |
T |
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| Q |
112 |
gcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattc |
211 |
Q |
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| T |
35364571 |
gcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgttcaccaataattc |
35364670 |
T |
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| Q |
212 |
gttgtaagttagaaaataattacgaaaccctttaattcgacacaaaaattccattgatttaaatttttgaaaaagaaaaatttagagtaagagaatgata |
311 |
Q |
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| T |
35364671 |
gttgtaagttagaaaataattatgaaaccctttaattccacacaaaaattccgttgatttaaatttttgaaaaagaaaaatttagagtaatagaatgata |
35364770 |
T |
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| Q |
312 |
tttcaatccaaagtagagaa |
331 |
Q |
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| T |
35364771 |
tttcaatccaaagtagagaa |
35364790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 35376235 - 35376422
Alignment:
| Q |
12 |
tatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttg |
111 |
Q |
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| T |
35376235 |
tatactcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttg |
35376334 |
T |
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| Q |
112 |
gcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
199 |
Q |
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| T |
35376335 |
gcacaagtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 35357706 - 35357867
Alignment:
| Q |
38 |
tgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcata |
137 |
Q |
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||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||| |||| ||||||| ||||||| |||| || |||||| || | |
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| T |
35357706 |
tgttggactatgattctgctagctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacaca |
35357805 |
T |
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| Q |
138 |
atttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
199 |
Q |
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| T |
35357806 |
gtccaatcccgttgaatcgcccttgaccacaacaagcatcctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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