View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_30 (Length: 299)
Name: NF2061_low_30
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 15121992 - 15121844
Alignment:
| Q |
136 |
cattaataacattaaccaatcgatggaagaaaaagaggtagatattattataaagttataaagaataatattgagttt-ctttgccacaacaactataat |
234 |
Q |
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| T |
15121992 |
cattaataacattaaccaatcgatggaagaaaaagaggtagaaattattataaatttataaagaataatgttgagttttctttgccacaacaactataat |
15121893 |
T |
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| Q |
235 |
gttttgggtgtattggagcttggctaattgttcttctatagaggatttg |
283 |
Q |
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| T |
15121892 |
gttttgggtgtattgaagcttggctaattgttcttctatagaggatttg |
15121844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 15122414 - 15122272
Alignment:
| Q |
1 |
tgacaagatcttgattttgttttggaaaaagaaaaatcaagtgagataaaagattcaaattgagaacaatttgattggctatgttgaaagatacttctta |
100 |
Q |
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| T |
15122414 |
tgacaagatcttgattttgttttgaaaaaagaaaaatcaagtgagataaaaaattcaaatcgagtacagtttgattggctatgttgaaagatacttcttc |
15122315 |
T |
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| Q |
101 |
aaagaaatcgtaggaattgttgggtttcatgtttccattaata |
143 |
Q |
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| T |
15122314 |
aaagaaatcgtaggatttgttgggtttcatgtttccattaata |
15122272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 37642708 - 37642771
Alignment:
| Q |
3 |
acaagatcttgattttgttttggaaaaagaaaaatcaagtgagataaaagattcaaattgagaa |
66 |
Q |
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| T |
37642708 |
acaagatcttgattgtgctttagaaaaagaaaaatcaagtgagatgaaagattcaaaatgagaa |
37642771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 21459904 - 21459940
Alignment:
| Q |
21 |
tttggaaaaagaaaaatcaagtgagataaaagattca |
57 |
Q |
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| T |
21459904 |
tttggaaatagaaaaatcaagtgagataaatgattca |
21459940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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