View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_low_32 (Length: 291)

Name: NF2061_low_32
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_low_32
NF2061_low_32
[»] chr5 (6 HSPs)
chr5 (87-291)||(2357362-2357566)
chr5 (239-291)||(43095302-43095354)
chr5 (238-291)||(3627727-3627780)
chr5 (239-291)||(9503887-9503939)
chr5 (239-291)||(9507869-9507921)
chr5 (239-291)||(34854296-34854348)
[»] chr3 (3 HSPs)
chr3 (239-291)||(27237826-27237878)
chr3 (239-291)||(47744057-47744109)
chr3 (239-291)||(55418624-55418676)
[»] chr2 (10 HSPs)
chr2 (239-291)||(5983668-5983720)
chr2 (240-291)||(1645246-1645297)
chr2 (238-291)||(5989625-5989678)
chr2 (239-291)||(4285271-4285323)
chr2 (239-291)||(13273521-13273573)
chr2 (239-291)||(21794333-21794385)
chr2 (259-291)||(31468927-31468959)
chr2 (239-291)||(45485631-45485683)
chr2 (239-291)||(45496896-45496948)
chr2 (239-291)||(45504638-45504690)
[»] chr1 (2 HSPs)
chr1 (240-291)||(10917119-10917170)
chr1 (239-289)||(3709511-3709561)
[»] chr6 (3 HSPs)
chr6 (235-281)||(7534379-7534425)
chr6 (239-291)||(367160-367212)
chr6 (239-291)||(7501212-7501264)
[»] scaffold0014 (1 HSPs)
scaffold0014 (239-291)||(34615-34667)
[»] chr8 (2 HSPs)
chr8 (239-291)||(14685534-14685586)
chr8 (239-291)||(11096363-11096415)
[»] chr4 (3 HSPs)
chr4 (238-291)||(53011398-53011451)
chr4 (239-290)||(53008505-53008556)
chr4 (239-284)||(56563268-56563313)
[»] chr7 (2 HSPs)
chr7 (239-291)||(22582180-22582232)
chr7 (239-291)||(35703443-35703495)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 87 - 291
Target Start/End: Original strand, 2357362 - 2357566
Alignment:
Q  87 aagaaatggcaaacatcatacgaaacacataaccataagattttagattcaaactcagttagatatgtccaacataacataaatattagcattgttagtt 186  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  2357362 aagaaatggcaaacatcatacgaaacacataaccgtaagattttagattcaaactcagttagagatgtccaacataacataaatattaacattgttagtt 2357461  T
Q  187 gagaattttatttagatacaactgatagttctgaattatttgttgtaaatcatgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgt 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||    
T  2357462 gagaattttatttagatacaattgatagttctgaattatttgttgtaaatcatgatggaacaatgtatgaaaattgaatgaaactaacacttaaaactgt 2357561  T
Q  287 gttca 291  Q
    |||||    
T  2357562 gttca 2357566  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 43095354 - 43095302
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  43095354 tgatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttca 43095302  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 3627780 - 3627727
Alignment:
Q  238 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||||||||||||||| ||| | ||||||||||| ||||||||| ||||||||    
T  3627780 atgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgtgttca 3627727  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 9503939 - 9503887
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||    
T  9503939 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttca 9503887  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 9507921 - 9507869
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||| |||||||||| ||| | ||||||||||||||||||||| || |||||    
T  9507921 tgatgtaacaatgtatgaaattagaatgaaaccaacacttaaaactgagttca 9507869  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 34854348 - 34854296
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| | ||||||    
T  34854348 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactatgttca 34854296  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 27237878 - 27237826
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27237878 tgatgcaacaatgtataaaaattgaatgaaaccaacacttaaaactgtgttca 27237826  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 47744109 - 47744057
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||| ||||||| ||| | ||||||||||||||||||||| ||||||||    
T  47744109 tgatggaaaaatgtatgaaattagaatgaaaccaacacttaaaactgtgttca 47744057  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 55418676 - 55418624
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||   |||||||||||||||||    
T  55418676 tgatggaacaatgtatgaaattagaatgaaaccggtacttaaaattgtgttca 55418624  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 5983720 - 5983668
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  5983720 tgatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttca 5983668  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 1645297 - 1645246
Alignment:
Q  240 gatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1645297 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttca 1645246  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 5989678 - 5989625
Alignment:
Q  238 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  5989678 atgatggaacaatgtatgaaaattgaaggaaaccaacacttaaaactgtgttca 5989625  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 4285323 - 4285271
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  4285323 tgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttca 4285271  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 13273573 - 13273521
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | |||||||||||||| |||||| ||||||||    
T  13273573 tgatggaacaatgtatgaaattagaatgaaaccaacatttaaaactgtgttca 13273521  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 21794333 - 21794385
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||| | ||||||||| ||||||||    
T  21794333 tgatggaacaatgtatgaaattagaatgaaactagcacttaaaactgtgttca 21794385  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 31468927 - 31468959
Alignment:
Q  259 attgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||||||||||| ||||||||    
T  31468927 attgaatgaaaccaacacttaaaactgtgttca 31468959  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 45485631 - 45485683
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||    
T  45485631 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttca 45485683  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 45496896 - 45496948
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | |||||||| |||||||||||| || |||||    
T  45496896 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttca 45496948  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 45504638 - 45504690
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | |||||||| |||||||||||| || |||||    
T  45504638 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttca 45504690  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 10917170 - 10917119
Alignment:
Q  240 gatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  10917170 gatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttca 10917119  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 3709511 - 3709561
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgtt 289  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  3709511 tgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgtt 3709561  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 7534425 - 7534379
Alignment:
Q  235 atcatgatggaacaatgtataaaaattgaatgaaaccaacacttaaa 281  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  7534425 atcatgatggaacaatgtatgaaaattgaatgaaaccaacacttaaa 7534379  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 367160 - 367212
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||| ||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  367160 tgatagaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttca 367212  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 7501212 - 7501264
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||| ||||||||    
T  7501212 tgatggaacaatgtatgaaattagaatgaaaccaacacctaaaactgtgttca 7501264  T

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Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 34667 - 34615
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  34667 tgatggaacagtgtataaagattgaatgaaaccaacacttaaaactgtgttca 34615  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 14685586 - 14685534
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  14685586 tgatgaaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttca 14685534  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 11096415 - 11096363
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||||||||||||| ||||||||    
T  11096415 tgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttca 11096363  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 53011451 - 53011398
Alignment:
Q  238 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||    
T  53011451 atgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttca 53011398  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 53008556 - 53008505
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttc 290  Q
    ||||||||||||| || ||| | |||||||||||||||||||||||||||||    
T  53008556 tgatggaacaatgcatgaaattagaatgaaaccaacacttaaaattgtgttc 53008505  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 56563313 - 56563268
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaatt 284  Q
    |||||||||||||||| ||| | ||||||||||| |||||||||||    
T  56563313 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaatt 56563268  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 22582180 - 22582232
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||| || ||||||||| |||||    
T  22582180 tgatggaacaatgtatgaaattagaatgaaaccagcatttaaaattgagttca 22582232  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 35703495 - 35703443
Alignment:
Q  239 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttca 291  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||    
T  35703495 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttca 35703443  T

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