View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_34 (Length: 283)
Name: NF2061_low_34
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 30818975 - 30818715
Alignment:
| Q |
13 |
aatatagatttaatgcagaagtcaaatttcttttttaaaagaaatgcaggattcaaagttgtcgtcatataaatatgcacaatataatgccttatagtta |
112 |
Q |
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| T |
30818975 |
aatatagatttagtgcagaagtcaaatttcttttttaaaagaaatgcaggattcaaagttgtcgtcatataaatatgcacaatataatgccttatagtta |
30818876 |
T |
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| Q |
113 |
ccacaagttcaacacttcaagccctaatctt------ccacaagagtttgtgaaacaaatggagaataaaaccatatccaccaagagtgtccattgtttg |
206 |
Q |
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| T |
30818875 |
ccacaagttcaacacttcaagccctaatcttctcaccccacaagagtttgtgaaacaaatggagaataaaaccatatccaccaagagtgttcattgtttg |
30818776 |
T |
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| Q |
207 |
gtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttttac |
267 |
Q |
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| T |
30818775 |
gtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttttac |
30818715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 30860826 - 30860724
Alignment:
| Q |
165 |
atggagaataaaaccatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttt |
264 |
Q |
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| T |
30860826 |
atggagaacaaaatcatatccaccaagagtgtccattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcgtt |
30860727 |
T |
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| Q |
265 |
tac |
267 |
Q |
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| T |
30860726 |
tac |
30860724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 30856577 - 30856508
Alignment:
| Q |
198 |
cattgtttggtgttgccatttccagcacatggtcacactaatccaatgttagaattctccaagcttttac |
267 |
Q |
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| T |
30856577 |
cattgtttggtcttatcatttccagctcaaggtcacattaatcccatgctacaattctccaagcttttac |
30856508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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