View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2061_low_42 (Length: 250)

Name: NF2061_low_42
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2061_low_42
NF2061_low_42
[»] chr5 (1 HSPs)
chr5 (35-162)||(4423920-4424047)
[»] chr3 (6 HSPs)
chr3 (165-239)||(29078428-29078502)
chr3 (165-239)||(20935682-20935756)
chr3 (164-228)||(3972646-3972710)
chr3 (164-228)||(3994384-3994448)
chr3 (164-228)||(3997168-3997232)
chr3 (164-228)||(4010713-4010777)
[»] chr8 (2 HSPs)
chr8 (165-239)||(42845660-42845734)
chr8 (170-228)||(4025470-4025528)
[»] chr4 (1 HSPs)
chr4 (174-239)||(46432753-46432818)
[»] chr7 (1 HSPs)
chr7 (172-239)||(22790323-22790390)
[»] chr6 (1 HSPs)
chr6 (170-228)||(20641653-20641711)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 4423920 - 4424047
Alignment:
Q  35 atggaagtctatcatcttatgctacattcaaactctcttgattagatggtagcttttctactactatgaaagtttacaacgtttatttatacgttggtgg 134  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4423920 atggaagtccatcatcttatgctacattcaaactctcttgattagatggtagcttttctactactatgaaagtttacaacgtttatttatacgttggtgg 4424019  T
Q  135 tcactcttgctatcatttgattacatgt 162  Q
    ||||||||||||||||||||||||||||    
T  4424020 tcactcttgctatcatttgattacatgt 4424047  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 29078428 - 29078502
Alignment:
Q  165 aggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29078428 aggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattaatttagtat 29078502  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 20935682 - 20935756
Alignment:
Q  165 aggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 239  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20935682 aggtaacgtttaaaatagacctatgtttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 20935756  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 3972646 - 3972710
Alignment:
Q  164 taggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3972646 taggtgacgtttataatggacctatgcttgaatgtgtccatcatggacccatgaataacaaccat 3972710  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3994448 - 3994384
Alignment:
Q  164 taggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3994448 taggtgacgtttataatggacctatgcttgaatgtgtccatcatggacccatgaataacaaccat 3994384  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3997232 - 3997168
Alignment:
Q  164 taggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3997232 taggtgacgtttataatggacctatgcttgaatgtgtccatcatggacccatgaataacaaccat 3997168  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 4010777 - 4010713
Alignment:
Q  164 taggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  4010777 taggtgacgtttataatggacctatgcttgaatgtgtccatcatggacccatgaataacaaccat 4010713  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 42845734 - 42845660
Alignment:
Q  165 aggtaacgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 239  Q
    ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||    
T  42845734 aggtaacgtttaaaatggacctatttttagatgtgtccatcatgaacccatgaataacaaccattaatttagtat 42845660  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 4025470 - 4025528
Alignment:
Q  170 acgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||||| ||| ||| |||||||| ||||||||||||||  ||||||||||||||||||    
T  4025470 acgtttagaatagacttatgcttgaatgtgtccatcatggtcccatgaataacaaccat 4025528  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 46432753 - 46432818
Alignment:
Q  174 ttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 239  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46432753 ttaaaatagacctatgcttggatgtgtccattatgaacccatgaataacaaccattgatttagtat 46432818  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 22790390 - 22790323
Alignment:
Q  172 gtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccattgatttagtat 239  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22790390 gtttagaatggacctatatttggatgtgtccatcatgaacccatgaataacaactattgatttagtat 22790323  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 20641711 - 20641653
Alignment:
Q  170 acgtttaaaatggacctatgcttggatgtgtccatcatgaacccatgaataacaaccat 228  Q
    ||||||| |||||| ||||||||| || ||||||||||| || ||||||||||||||||    
T  20641711 acgtttagaatggaactatgcttgaatttgtccatcatggacgcatgaataacaaccat 20641653  T

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