View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_49 (Length: 243)
Name: NF2061_low_49
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31636504 - 31636274
Alignment:
| Q |
1 |
cttcttcatccatcttcttttctctttttctccgtgatacttttaatgatcttcatcatcaatattccaacgtgtatgtgcgatgattacacagactgca |
100 |
Q |
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| T |
31636504 |
cttcttcatccatcttcttttctctttttctccgtgatgcttttgatgatcttcatcatcaatattccaacgtgtatgtgcaatgattacacagactgca |
31636405 |
T |
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| Q |
101 |
acgaagcttttgactgtgga---gacagtgtcacaaacctcaagtatccattctggggaaaaaacagaggaaaggaatgtg---gtttttctgatcctaa |
194 |
Q |
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| T |
31636404 |
acgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctggggaaataacagagaagagcgttgtggtagtgtttctgatcctaa |
31636305 |
T |
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| Q |
195 |
tatggagcttacatgcgaagaaagtgttcca |
225 |
Q |
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| T |
31636304 |
tatggagcttacatgcgaagaaagtgttcca |
31636274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 31621469 - 31621279
Alignment:
| Q |
41 |
ttttaatgatcttcatcatcaatattccaacgtgtatgtgcgatgattacacagactgcaacgaagcttttgactgtgga---gacagtgtcacaaacct |
137 |
Q |
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| T |
31621469 |
ttttgatgatcttcatcatcaatattccaacgtgtatgtgcaatgattacacagactgcaacgaagcttttgaatgcggaagtagcagcatcacaaacct |
31621370 |
T |
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| Q |
138 |
caagtatccattctggggaaaaaacagaggaaaggaatgtg---gtttttctgatcctaatatggagcttacatgcgaagaaagtgttcca |
225 |
Q |
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| T |
31621369 |
caagtatccattctggggaaataacagagaagagcgttgtggtagtgtttctgatcctaatatggagcttacatgcgaagaaagtgttcca |
31621279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 31616718 - 31616533
Alignment:
| Q |
55 |
atcatcaatattccaacgtgtatgtgcgatgat---------tacacagactgcaacgaagcttttgactgtggagacagtgtcacaaacctcaagtatc |
145 |
Q |
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| T |
31616718 |
atcatcaatattccaacgtgtatgtgtgatgatgacgaccaatacacaaactgtaacaacgcttttaactgcggaagcagcatcacgaacatcaagtatc |
31616619 |
T |
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| Q |
146 |
cattctggggaaaaaacagaggaaaggaatgtgg------tttttctgatcctaatatggagcttacatgcgaagaaagtgttcca |
225 |
Q |
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| T |
31616618 |
cattctggggagaaaataggaaaaaatattgtggtggtgtttcttctgatcctaatatggagcttacatgcgaagaaagtgttcca |
31616533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 31597496 - 31597424
Alignment:
| Q |
142 |
tatccattctggggaaaaaacagaggaaaggaatgtggtttttctgatcctaatatggagcttacatgcgaag |
214 |
Q |
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| T |
31597496 |
tatccattctggggagaaaatagaggaaattattgtggtgtttccgatcctaatatgaagcttacatgcgaag |
31597424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 31606646 - 31606608
Alignment:
| Q |
187 |
gatcctaatatggagcttacatgcgaagaaagtgttcca |
225 |
Q |
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| T |
31606646 |
gatcctaatatggatcttacatgcgaagaaagtgttcca |
31606608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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