View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2061_low_52 (Length: 242)
Name: NF2061_low_52
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 49686433 - 49686666
Alignment:
| Q |
1 |
ccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686433 |
ccttttaccacagttgaattcccaaactgtggtgcatt-ggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaa |
49686531 |
T |
|
| Q |
101 |
gga----------ttcaagttacaaacattaaaaatgagcggtccaacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgctt |
190 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686532 |
ggaggaaaacactttcaagttacaaacattaaaaatgagcggcccaacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgctt |
49686631 |
T |
|
| Q |
191 |
gcgaggcctttagctatgatatcactctccctcct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686632 |
gcgaggcctttagctatgatatcactctccctcct |
49686666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 49679058 - 49679159
Alignment:
| Q |
1 |
ccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
49679058 |
ccttttacaacagttgaattcccaagctgtggtacatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagcacgtccagttaaccaaa |
49679156 |
T |
|
| Q |
101 |
gga |
103 |
Q |
| |
|
||| |
|
|
| T |
49679157 |
gga |
49679159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49690693 - 49690791
Alignment:
| Q |
1 |
ccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | |||||||| |||||| |
|
|
| T |
49690693 |
ccttttacaacagttgaattcccaagctgtggtgcatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaa |
49690791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 49690842 - 49690915
Alignment:
| Q |
135 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg |
208 |
Q |
| |
|
|||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||||||| |
|
|
| T |
49690842 |
caacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatg |
49690915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 49679207 - 49679269
Alignment:
| Q |
135 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggc |
197 |
Q |
| |
|
|||||||||||||||| |||| | ||| |||||||||||||| |||| |||||||| ||||| |
|
|
| T |
49679207 |
caacactatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggc |
49679269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University