View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_56 (Length: 237)
Name: NF2061_low_56
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_56 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 16573242 - 16573043
Alignment:
| Q |
39 |
ggtgaaacacacgatatacaatatgtgttggaattaagtttcattagttagttcactaatatatgtc-ttgatcgattataaactcctcctgttccaatt |
137 |
Q |
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| T |
16573242 |
ggtgaaacacacgatatacaaaatgtgttggaattaagtttcattagttagttcactaatatatgtccttgatcaattataagctcctcctgttccaatt |
16573143 |
T |
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| Q |
138 |
gtacctttcccattcatccttagatcttggtgtttggcgagcaagtgtagtttttaacttttgatatctcgttcaattagctaaaagagaagcatgaagt |
237 |
Q |
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| T |
16573142 |
gtaccttcaccattcatccttagatctcggtgtttggcgagcaagtatagtttttaacttttgatgtctcgttcaattagctaaaagagaagcatgaagt |
16573043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 26744560 - 26744500
Alignment:
| Q |
38 |
gggtgaaacacacgatatacaatatgtgttggaattaagtttcattagttagttcactaat |
98 |
Q |
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| T |
26744560 |
gggtgaaacaaacaatttacaatttgtgttaggattaagcttcattagttagtttactaat |
26744500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 18435541 - 18435624
Alignment:
| Q |
62 |
tgtgttggaattaagtttcattagttagttcactaatatatgt-cttgatcgattataaactcctcctgttccaattgtacctt |
144 |
Q |
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| T |
18435541 |
tgtgttgggattaagcttcattagttagttcactaatatatttccttgatcgagtataaactcatcttatcccaattatacctt |
18435624 |
T |
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