View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_6 (Length: 562)
Name: NF2061_low_6
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 513
Target Start/End: Complemental strand, 2064192 - 2063701
Alignment:
| Q |
19 |
gaaggtaacagaattggtgaagaaattagtgaaatgtttcggtggctttcaggggtatgattggtaaagtacattaacatttaggtttataaatttcgat |
118 |
Q |
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| T |
2064192 |
gaaggtaacagaattggtgaagagattagtgaaatgtttcggtggctttcaggggtatgattggtaaagtacattaacatttaggtttataaatttcgat |
2064093 |
T |
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| Q |
119 |
ataannnnnnnnnnnnnaatctttgtaaacatttgctactatgttatttggcttcacttttgattttcctttgaggctttagaacaaaattaatgcaaat |
218 |
Q |
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| T |
2064092 |
ataatttttttatttttaatctttgtaaacatttgctactatgttatttggcttcacttttgattttcctttgaggctttagaacaaaattaatgcaaat |
2063993 |
T |
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| Q |
219 |
gagtagaggtatggtgattttgggatttagatcatgaatatttttaggaatgttaaattagatgaaatgatacaaggaattataatattggatcttgtaa |
318 |
Q |
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| T |
2063992 |
gagtagaggtatggtgattttgggatttagatcatgaatatttttaggaatgtt-aattagatgaaaagatacaaggaattataatattggatcttgtaa |
2063894 |
T |
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| Q |
319 |
aaaggcgcaccaattatggataannnnnnnnctttctctatacaaaaatattat-gggttgtttt---tagtagtttgtattctttcttgccaattataa |
414 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2063893 |
aaagacgcaccaattatggataattttttttttctctctatacaaaaatattatggggttgtttttagtagtagtttgtattctttcttgccaattataa |
2063794 |
T |
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| Q |
415 |
tacaccatggttatgattatgnnnnnnnactaaaaatctctacttcaatctagattctatcatactcgatgatgaagtttttctttaaaagatctaaca |
513 |
Q |
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||||||||| ||||| || | |||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
2063793 |
tacaccatgattatgttttt------ttactagaaatctctacttcaaactagattctatcatactcgatgataaaatttttctttaaaagatgtaaca |
2063701 |
T |
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