View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_7 (Length: 559)
Name: NF2061_low_7
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 28472016 - 28471488
Alignment:
| Q |
19 |
gattaaccatcgtgttttctcattcaacaagaagaattttgtttactcgcttgatcatcaccacgatgaatcgttcgactttgttttgtccaaggatttg |
118 |
Q |
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| T |
28472016 |
gattaaccatcgtgttttctcattcaacaagaagaattttgtttactcgcttgatcatcaccacgatgaatcgttcgactttgttttgtccaaggatttg |
28471917 |
T |
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| Q |
119 |
ggaaaagttgctgtccctgcattggttgtccttgaagttgaacgtattctgaaacctaatggaattggtgctttgcttttggattttgatgacaacgaca |
218 |
Q |
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| T |
28471916 |
ggaaaagttgctgtccctgcattggttgtccttgaagttgaacgtattctgaaacctaatggaattggtgctttgcttttggatttcgatgacaacgaca |
28471817 |
T |
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| Q |
219 |
acattaacatgataagatatgcttcaccgatttcagcgttgctgcgaaattcatctattgtccatgttagtcttgtcaataatcatggcctcgttgtttt |
318 |
Q |
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| T |
28471816 |
acattaacatgataagatatgcttcaccgatttcagcgttgctgcgaaattcatctattgttcatgttagtcttgtcaataatcatggcctcgttgtttt |
28471717 |
T |
|
| Q |
319 |
caagaaaaaatcagaatcaaaatctgaaactgaaagtgaaaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaacttt |
418 |
Q |
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| T |
28471716 |
caagaaaaaatcagaatcaaaatctgaaactgaaagtgaaaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaacttt |
28471617 |
T |
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| Q |
419 |
gctaagcaattcatgaatctaatagagccgccgctagcgaaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaa |
518 |
Q |
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| T |
28471616 |
gctaagcaattcatgaatctaatagagccgccgctagcgaaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaa |
28471517 |
T |
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| Q |
519 |
gtaagaagaatttagtttatgttaatatt |
547 |
Q |
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| T |
28471516 |
gtaagaagaatttagtttatgttaatatt |
28471488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 40806240 - 40806300
Alignment:
| Q |
129 |
ctgtccctgcattggttgtccttgaagttgaacgtattctgaaacctaatggaattggtgc |
189 |
Q |
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| T |
40806240 |
ctgtccctgctttgcttgttcttgaggttgaacgtgttcttaagcctaatggaattggtgc |
40806300 |
T |
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