View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_8 (Length: 541)
Name: NF2061_low_8
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 42 - 524
Target Start/End: Complemental strand, 24225284 - 24224797
Alignment:
| Q |
42 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactata |
141 |
Q |
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| T |
24225284 |
tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactata |
24225185 |
T |
|
| Q |
142 |
catatcaaccaacaaccggagcaaaccgaacaaacattaaccaatgacgacaagcatcaaagaaa-----caagtaaataccacggtgaaagaataactt |
236 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
24225184 |
catatcaaccaacaaccggagcagaccgaacaaacattaaccaatgacgacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataactt |
24225085 |
T |
|
| Q |
237 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaaaaatcc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225084 |
ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaaaaatcc |
24224985 |
T |
|
| Q |
337 |
aaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcacgttcccagtttctctaatttgtttctaccaagcaattgacgg |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24224984 |
aaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcatgttcccaatttctctaatttgtttctaccaagcaattgacgg |
24224885 |
T |
|
| Q |
437 |
aaggaaccatgctttttcttcaatcataaannnnnnnnccgaacaaatgaccaacattaaaaattaaaccaaatcaatcacacaacat |
524 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224884 |
aaggaaccatgctttttcttcaatcataaattttttttccgaataaatgaccaacattaaaaattaaaccaaatcaatcacacaacat |
24224797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 521
Target Start/End: Complemental strand, 13166727 - 13166686
Alignment:
| Q |
480 |
caaatgaccaacattaaaaattaaaccaaatcaatcacacaa |
521 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||| |
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| T |
13166727 |
caaaagaccaacactataaattaaaccaaatcaatcacacaa |
13166686 |
T |
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