View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2061_low_9 (Length: 461)
Name: NF2061_low_9
Description: NF2061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2061_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 2632908 - 2632464
Alignment:
| Q |
1 |
tctatgagaagacaccaaactttagattaatcaaaaaataactatatgaagtttctaatccaagaatccataatttttaggagagaaataggccaaagta |
100 |
Q |
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| T |
2632908 |
tctatgagaagacaccaaactttagattaatcaaaaaataactatatgaagtttctaatccaagaatccataatttttaggagagaaataggccaaagta |
2632809 |
T |
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| Q |
101 |
cacatgcgaaagttgtacaccaacatacaatgaataattgatcgaataagttggactcttcccataatatagaaagcagtgaacctttccaagccaaatt |
200 |
Q |
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| T |
2632808 |
tacatgcgaaagttgtacaccaacatacaatgaataattgatcgaataagttggactcttcccataatatagaaagcagtgaacctttccaagccaaatt |
2632709 |
T |
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| Q |
201 |
ttttgctctgattaataaataattggttgaagataaatagggtaaggcatgcctttgaagataggaaccctaaaaatataatttatgatttattttatta |
300 |
Q |
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| T |
2632708 |
ttttgctctgattaataaataattggttgaagataaataggctaaggcatgcctttgaagataggaaccctaaaaatataatttatgatttattttatta |
2632609 |
T |
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| Q |
301 |
acatgaaccagctatacgtgaaacaaattacagccagctttattttctaatatagctgcaaattcaacagacacacatgcactcctgatttttgcaggaa |
400 |
Q |
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| T |
2632608 |
acatgaaccagctatacgtgaaacaaattacagccagctttattttctaatatagctgcaaattcaacagacacacatgcactcctgatttttgcaggaa |
2632509 |
T |
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| Q |
401 |
ccattgattaaaccttctccaaacctacaattaacgtcacaaatt |
445 |
Q |
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| T |
2632508 |
ccattgattaaaccttctccaaatctgcaattaatgtcacaaatt |
2632464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 2618916 - 2618863
Alignment:
| Q |
350 |
atatagctgcaaattcaacagacacacatgcactcctgatttttgcaggaacca |
403 |
Q |
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| T |
2618916 |
atatagttgcaaattcaacagacacacatgcactcctcatttttgcaggaacca |
2618863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 2630628 - 2630575
Alignment:
| Q |
350 |
atatagctgcaaattcaacagacacacatgcactcctgatttttgcaggaacca |
403 |
Q |
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| T |
2630628 |
atatagttgcaaattcaacagacacacatgcactccccatttttgcaggaacca |
2630575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 2627156 - 2627064
Alignment:
| Q |
115 |
gtacaccaacatacaatgaataattgatcgaataagttggactcttcccataatatagaaagcagtgaacctttccaagccaaattttttgctct |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||| | |||||| ||||||||||||| || |||| ||||||||| |
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| T |
2627156 |
gtacaccaacatacaatgaataattgactgaataagttggatccttcccat--cacagaaaggagtgaacctttccgaggcaaaagttttgctct |
2627064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 2624365 - 2624300
Alignment:
| Q |
339 |
tttattttcta-atatagctgcaaattcaacagacacacatgcactcctgatttttgcaggaacca |
403 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
2624365 |
tttattttctatatatagttgcaaattcaacaggaacacatgcactcctcatttttgcagtaacca |
2624300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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