View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_101 (Length: 210)
Name: NF20620_high_101
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_101 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 38935579 - 38935400
Alignment:
| Q |
14 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcg |
113 |
Q |
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| T |
38935579 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaaactctaacaattcg |
38935480 |
T |
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| Q |
114 |
acttggacctcagttgccggatcctatggctacatggctccaggtacacaatgcatttaacgattgagattatcaacagt |
193 |
Q |
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| T |
38935479 |
acttggacctcagttgccggatcctatggctacatggctccaggtacacaatgcatttaacgattgagattatcaacagt |
38935400 |
T |
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Target: scaffold0586 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 10258 - 10088
Alignment:
| Q |
14 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcg |
113 |
Q |
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| T |
10258 |
gcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt--cactatcaagttgctaagctttaacaataca |
10161 |
T |
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| Q |
114 |
acttggacctcagttgccggatcctatggctacatggctccaggtacacaatgcatttaacgattgagattat |
186 |
Q |
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| T |
10160 |
actaggagctcagttgttgtatcctatggctacacggttccaagtacacaatgtatttaatgattgagattat |
10088 |
T |
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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 26662273 - 26662125
Alignment:
| Q |
14 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcg |
113 |
Q |
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| T |
26662273 |
gcacaaagatgtaacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt--cactatcaagttactaagctttaacaataca |
26662176 |
T |
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| Q |
114 |
acttggacctcagttgccggatcctatggctacatggctccaggtacacaa |
164 |
Q |
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| T |
26662175 |
actaggagctcagttgatgtatcctatggctacatggttctagatacacaa |
26662125 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 22902529 - 22902386
Alignment:
| Q |
14 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcg |
113 |
Q |
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| T |
22902529 |
gcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttacagatttt--cactatcaaattgctaagttttaacaataca |
22902432 |
T |
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| Q |
114 |
acttggacctcagttgccggatcctatggctacatggctccaggta |
159 |
Q |
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| T |
22902431 |
actaggagctcagttgttgtatcctatggctacacggttccaggta |
22902386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 19702507 - 19702441
Alignment:
| Q |
14 |
gcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagatttt |
80 |
Q |
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| T |
19702507 |
gcacagagatataacattgaacatcatactacttgtcttagattatgtaccacatcttgcagatttt |
19702441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 19701758 - 19701662
Alignment:
| Q |
88 |
caaagctgctaagctctaacaattcgacttggacctcagttgccggatcctatggctacatggctccaggtacacaatgcatttaacgattgagatt |
184 |
Q |
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| T |
19701758 |
caaagttgctaagctttaacaatacaactaggagctcagttgttgtatgctattactacatggttccaggtacacaatgtatttaatgattgagatt |
19701662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 10638272 - 10638135
Alignment:
| Q |
46 |
ttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcgacttggacctcagttgccggatcctatggcta |
145 |
Q |
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| T |
10638272 |
ttgacttagattatgtaccacatcttgcagatttt--cactatcaaattgctaagttttaacaatacaactaggagctcagttgttgtatcctatggcta |
10638175 |
T |
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| Q |
146 |
catggctccaggtacacaatgcatttaacgattgagattat |
186 |
Q |
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| T |
10638174 |
cacggttccaggtacacaatgca-ttaatgattgagattat |
10638135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 32717339 - 32717477
Alignment:
| Q |
46 |
ttgactcagattatgtacctcatcttgcagattttggcactgcaaagctgctaagctctaacaattcgacttggacctcagttgccggatcctatggcta |
145 |
Q |
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| T |
32717339 |
ttgacttagattatgtaccacatcttgcatattct--cactatcaagttgttaagctttaacaatacaactaggagctcaattgttgtatcctatggcta |
32717436 |
T |
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| Q |
146 |
catggctccaggtacacaatgcatttaacgattgagattat |
186 |
Q |
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| T |
32717437 |
cacggttccaggtacacaatgtatttaatgattgagattat |
32717477 |
T |
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