View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_102 (Length: 209)
Name: NF20620_high_102
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_102 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 2624251 - 2624075
Alignment:
| Q |
17 |
aatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaa |
116 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
2624251 |
aatttcatgtggagaatcaacaattatgttggttggtcttttttgtagacttatcaaagagtaatatgctccacttggccctttagacaacaaggatgaa |
2624152 |
T |
|
| Q |
117 |
tgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624151 |
tgtgttccattctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
2624075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 2592706 - 2592531
Alignment:
| Q |
18 |
atttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaat |
117 |
Q |
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||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2592706 |
atttcatgtgaagaatcaataattatgttggttggtcttatttttagacttatcaaagagtaatatgctccacttggccctttagacaacaaagatgaat |
2592607 |
T |
|
| Q |
118 |
gtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592606 |
gtgttcctttctcaataacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
2592531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 2440761 - 2440585
Alignment:
| Q |
17 |
aatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaa |
116 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2440761 |
aatttcatggcaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccacttggccctttagacaacaaagatgaa |
2440662 |
T |
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| Q |
117 |
tgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2440661 |
tgtgttcctttctcaacaacaattcccttatccaaaacagcaatcaaatcacagttttgaatagtactcaacctatg |
2440585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 2671939 - 2672114
Alignment:
| Q |
18 |
atttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaat |
117 |
Q |
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||||||||||||||||||| | | ||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
2671939 |
atttcatgtgaagaatcaatagtaatgttggttggtcttctttgtagacttaccaaagagtaataagctccacttggccctttagacaacaaagatgaat |
2672038 |
T |
|
| Q |
118 |
gtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||||||| |
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| T |
2672039 |
gtgttcctttctcaacaacacttcccttgtctaaaacagcaatcaaatcgcaattttgtatagtactcaacctatg |
2672114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 2640779 - 2640954
Alignment:
| Q |
18 |
atttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaat |
117 |
Q |
| |
|
||||||||||||||| |||||||| | || |||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
2640779 |
atttcatgtgaagaaccaacaattgtattggttggtcttctttgtagacttactaaagagtaataaactccacttggtcccaaagacaacaaagatgaat |
2640878 |
T |
|
| Q |
118 |
gtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
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|||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
2640879 |
gtgttcctttttcaacaacaatccccttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2640954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 2451450 - 2451307
Alignment:
| Q |
50 |
tggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatcc |
149 |
Q |
| |
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|||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2451450 |
tggtcttctttgtagacttaccatagagtaataagctccacttggtcctttagacaacaaagatgaatgtgttcctttctcaataacactacccttatcc |
2451351 |
T |
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| Q |
150 |
aaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
| |
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|||||| |||||| |||||| ||||| ||||||||||||||||| |
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| T |
2451350 |
aaaacaacaatcatatcacaattttgtatagtactcaacctatg |
2451307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 2596121 - 2596298
Alignment:
| Q |
18 |
atttcatgtgaagaatcaacaattatgttcgttg--gtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatga |
115 |
Q |
| |
|
|||||||||||||||||||||||| | || ||| |||||||||||||||||| |||||||||||| ||||||||| || ||| |||||||| || |
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| T |
2596121 |
atttcatgtgaagaatcaacaattgtattggttatagtcttctttgtagacttaccaaagagtaataaactccacttggtcccaaagataacaaagacga |
2596220 |
T |
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| Q |
116 |
atgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
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|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
2596221 |
atgtgttcctttctcaacaacaattcccttatccaagacagcaatcaaatcacaattttgtatagtactcaacctatg |
2596298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 2568595 - 2568739
Alignment:
| Q |
49 |
ttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatc |
148 |
Q |
| |
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||||||||||||| ||||||| |||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||| |
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| T |
2568595 |
ttggtcttctttgcagacttaccaaagagtaataagcaccacttggcccttttgacaataaatttgaatgtgttcctttctcaacaacaatgcccttatc |
2568694 |
T |
|
| Q |
149 |
caaaacagcaatcaaatcacagttttggatagtactcaacctatg |
193 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
2568695 |
caaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2568739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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