View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_high_12 (Length: 619)

Name: NF20620_high_12
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_high_12
NF20620_high_12
[»] chr2 (1 HSPs)
chr2 (1-619)||(4569573-4570185)


Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 4570185 - 4569573
Alignment:
Q  1 aagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaatttaaaatgttgaaaattaaagaacaaattctcatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||| |||||||||    
T  4570185 aagcaatcaggtagcattaagcaaaaataacctcacaacataacacaaaccatacaattaaa------atgttgaaaatcaaagaacaaactctcatttt 4570092  T
Q  101 tccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacaccgaccgcaacctcaatacaaccatacgctacctccgcgcttac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4570091 tccttctcacacccccttccttgaagaccacaccctccctctctcccacctcgacatcgaccgcaacctcaatacaaccatacgctacctccgcgcttac 4569992  T
Q  201 acagnnnnnnnnnnnnnnnnnnntgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgct 300  Q
    ||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569991 acagccaccaccacccaccaccatgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgct 4569892  T
Q  301 accacaaccaccgcctcgaactcttctgctccaaaagccaagacagcgttcctctcattcacgccaccgtagacatcactctcgaatccgtaaactacct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4569891 accacaaccaccgcctcgaactcttctgctccaaaagccaagacagcgttcctctcatccacgccaccgtagacatcactctcgaatccgtaaactacct 4569792  T
Q  401 cgacgacgacccatcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4569791 cgacgacgacccatcttcccattttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttac 4569692  T
Q  501 aagtgcggtgggttcactctcggtgcagcaattcaccattcactttgtgatggaatgggtgggacgcnnnnnnncaacacgatggcggagttggctcgtg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  4569691 aagtgcggtgggttcactctcggtgcagcaattcaccattcactttgtgatggaatgggtgggacgctttttttcaacacgatggcggagttggctcgtg 4569592  T
Q  601 gcggggaacatatcatggt 619  Q
    |||||||||||||||||||    
T  4569591 gcggggaacatatcatggt 4569573  T

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