View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20620_high_15 (Length: 601)
Name: NF20620_high_15
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 212 - 582
Target Start/End: Complemental strand, 474215 - 473845
Alignment:
| Q |
212 |
tatctacaaacctcaatgtcctcctcaattctctttcaaccaactcttctcaacaacaagatggttactacatgaccatcatgggttttggaacaaccaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474215 |
tatctacaaacctcaatgtcctcctcaattctctttcaaccaactcttctcaacaacaagatggttactacatgaccatcatgggttttggaacaaccaa |
474116 |
T |
|
| Q |
312 |
cgctgttaacggaatctttctctgtcgtggtgatgtcaacacaacaacttgtcaaaactgtgttactgacgcggctacacagatcaaacgacgttgtaca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474115 |
cgctgttaacggaatctttctctgtcgtggtgatgtcaacacaacaacttgtcaaaactgtgttactgacgcggctacacagatcaaacgacgttgtaca |
474016 |
T |
|
| Q |
412 |
aatcaaacagaagctattatttggtatgaagaatgtcttcttcgttacactaacaaattttttagatattacagtattgaacctaggttaaatcctaaaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474015 |
aatcaaacagaagctattatttggtatgaagaatgtcttcttcgttacactaacaaattttttagatattacagtattgaacctaggttaaatcctaaaa |
473916 |
T |
|
| Q |
512 |
atggtaaaaatgtttctggtgttgactttgaacggttcaatgaaacggtatttgggttgttgaatgagttg |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
473915 |
atggtaaaaatgtttctggtgttgactttgaacggttcaatgaaacggtgtttgggttgttgaatgagttg |
473845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 474429 - 474251
Alignment:
| Q |
18 |
catcatgatcccatagaaagaaaatattgtagtttaatttattgatcatacaaaagaaaac--------aatataatgagtactactacctc-------- |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
474429 |
catcatgatcccatagaaagaaaatattgtagtttaatttattgatcatacaaaagaaaactacaatataatataatgattactacttcctcaaaacaaa |
474330 |
T |
|
| Q |
102 |
-------gtacgtagtttccatcctctatctaaccttattattagcaacagaagcatctccaacatatctaggctcttactg |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
474329 |
tctggtcgtacgtagtttccatcctctatctaaccttatta---gcaacagaagcatctccaacatatctaggctcttactg |
474251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University