View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_28 (Length: 423)
Name: NF20620_high_28
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 23755293 - 23754894
Alignment:
| Q |
7 |
gcagcacagagcac-aaaacgaagggaaaatgacgactcctgcaa-ttgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaata |
104 |
Q |
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||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755293 |
gcagcgcagagcaccaaaacaaagggaaaatgacgactcctgcaaattgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaata |
23755194 |
T |
|
| Q |
105 |
tatgactcaacagttcaggtacatttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattagcactcataaattttc |
204 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
23755193 |
tatgactcaacaggtcaggtacacttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattatcattcataaattttc |
23755094 |
T |
|
| Q |
205 |
aaatggtgggtctg--nnnnnnnncttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcatt |
302 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755093 |
aaatggtgggtctgttttttttttcttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcatt |
23754994 |
T |
|
| Q |
303 |
attttcttctcacccactgaatgcaaggattgggatggcaacaaaactgaaacctactcactctggctcatgttaaatctcacatcaaatgcgatgtgat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
23754993 |
attttcttctcacccactgaatgcaaggattgggatggcaacaaaactgaaacctactcactctgtctcatgttaaatctcacatcaaatgtgatgtgat |
23754894 |
T |
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