View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_29 (Length: 418)
Name: NF20620_high_29
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 52476544 - 52476933
Alignment:
| Q |
17 |
agttttaattgaacttttttactcgtaccacctaatcaatagtatgtgcattaatgacaatgaaaatagatcaatgtgtgaaatggtcgatcaagatata |
116 |
Q |
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| T |
52476544 |
agttttaattgaacttttttactcgtagcacctaatcaatagtatgtgcattaatgacaatgaaaatagatcaatgtgtgaaatggtcgatcaagatata |
52476643 |
T |
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| Q |
117 |
tagttattgtggacgaagggaatataacatgtaccttgagtgcttcatcttgtatgatgacaagggatccacatgtccaggtacttgtagcttcagttac |
216 |
Q |
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| T |
52476644 |
tagttattgtggacgaagggaatataacatgtaccttgagtgcttcatcttgtatgatgacaagggatccacatgtccaggtacctgtagcttcagttac |
52476743 |
T |
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| Q |
217 |
aagttcatcaaacagttgaacaaaggaaggcaaagaatgaggcgagaacaaactcaagagacggctacgaatgagtttgtgatgatgctcagctgcacat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476744 |
aagttcatcaaacagttgaacaaaggaaggcaaagaatgaggcgagaacaaactcaagagacggctacgaatgagtttgtgatgatgctcagctgcacat |
52476843 |
T |
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| Q |
317 |
agcaagctatcgggacccaagagcttggagattgactttatgtacttctttgagaatttccctccctcgtttcttagaatcacctttgct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52476844 |
agcaagctatcgggacccaagagcttggagattgactttatgtacttctttgagaatttccctccctcgtttcttagaatcacctttgct |
52476933 |
T |
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