View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_33 (Length: 401)
Name: NF20620_high_33
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 42 - 401
Target Start/End: Complemental strand, 2834422 - 2834064
Alignment:
| Q |
42 |
atttatccacctaaatagacacatagaaaaatcgaatctaaaacattcagaaggggcacacttacaccaccaaatcaacctaaacagatgcaaagatcga |
141 |
Q |
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| T |
2834422 |
atttatccacctaaatagacacatagaaaaatcgaatttaaaacattcaggagaggcacacttacaccaccaaatcaacctaaacagatgcaaagatcga |
2834323 |
T |
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| Q |
142 |
atttaaaaccacggagctataccttatgaaatcctttcaaatttaagcacgaacttaacttacatattctacagcatgttttgatatacttttaaaaact |
241 |
Q |
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| T |
2834322 |
-tttaaaaccacggaactataccttatgaaatcctttcaaatttaagcacgaacttaacttacatattgtacagcatgttttgatatacttttaaaaact |
2834224 |
T |
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| Q |
242 |
ccgcacaattggatcaaaagcttgtattttgcaatttttgtttaaattaaaccgtgatttgattgaaaacgcacgctaagccaccctcatgcttaactat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2834223 |
ccgcacaattggatcaaaagcttgtattttgcaatttttgtttaaattaaaccgtgatttgattgaaaacgcacgctaagccaccctcatgcttaactat |
2834124 |
T |
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| Q |
342 |
ttaattggttttaatcaaacaatttaattaaaaagaaaccgacactgaatgaatgaaaca |
401 |
Q |
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| T |
2834123 |
ttaattggttttaatcaaacaatttaattaaaaagaaaccgacactgaatgaatgaaaca |
2834064 |
T |
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