View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_35 (Length: 393)
Name: NF20620_high_35
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 34685629 - 34685991
Alignment:
| Q |
11 |
cacagacacaactatattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagta |
110 |
Q |
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| T |
34685629 |
cacacacacaactatattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagta |
34685728 |
T |
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| Q |
111 |
tccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttcca |
210 |
Q |
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| T |
34685729 |
tccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttcca |
34685828 |
T |
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| Q |
211 |
catttccctcacacttcaaccacacaaaagctgcaaaataaataaatatgaatacatacataaacatttcgacaagaaatctacttaggaagttgtatta |
310 |
Q |
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| T |
34685829 |
catttccctcacacttcaaccacacaaaagctgcaaaataaataa--atgaatacatacataaacatttcgacaagaaatctacttaggaagttgtatta |
34685926 |
T |
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| Q |
311 |
tctaatctaattgttttaatcactgcaaatgtaattttatgtcaaattaagctatagtatagtat |
375 |
Q |
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| T |
34685927 |
tctaatctaattgttttaatcactgcaaatgtaattttatgtcaaattaagctatagtatagtat |
34685991 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 43611302 - 43611374
Alignment:
| Q |
94 |
taaaattttcatcagtatccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttct |
166 |
Q |
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| T |
43611302 |
taaaatgttcatctgtatccaacatgctaattcttacatattttgggctcgccccaaattgttcaccacttct |
43611374 |
T |
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