View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20620_high_38 (Length: 379)
Name: NF20620_high_38
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 3489398 - 3489049
Alignment:
| Q |
11 |
cacagaaccatcagcagcaataccccaatagaggccaatatggccatcagaaccctaatcaaaaacaaacataattgtcaattaattaatcacaaaaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3489398 |
cacagaaccatcagcagcaataccccaatagaggccaatatggccatcagaaccctaatcaaacacaaacataattgtcaattaattaatcacaaaaggt |
3489299 |
T |
|
| Q |
111 |
gaatttttatttagaggctaattaagaaagtgactcacagatgcagcaaaaaccgttccatccttgtggtcatagatcacaaatgcaaaactgccttcaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3489298 |
gaatttttatttagaggctaattaagaaagtgactcacagatgcagcaaaaacagttccgtccttatggtcatagatcacaaatgcaaaactgccttcaa |
3489199 |
T |
|
| Q |
211 |
gtcctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgataaacatagcctcattgcctccctttgatagtcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3489198 |
gtcctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatacgcttcaataataaacatagcctcattgcctccctttgatagtcc |
3489099 |
T |
|
| Q |
311 |
atactgcttgttcaattgactaagattatgcaggttacccatgaaagcac |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3489098 |
atactgcttgttcaattgactaagattatgcaggttacccatgaaagcac |
3489049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 33569100 - 33568955
Alignment:
| Q |
179 |
gtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatcagcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgata |
278 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| | |||| |||||||| | || |||||||| | |||||| ||||||| ||| |||||||| | | |
|
|
| T |
33569100 |
gtcatagacaacaaaggcaaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcacggagtgtcctataagcttcaatcaga |
33569001 |
T |
|
| Q |
279 |
aacatagcctcattgcctccctttgatagtccatactgcttgttca |
324 |
Q |
| |
|
||||| || |||| ||||||||| | ||||| |||||||||| |
|
|
| T |
33569000 |
aacatggcttcatcagttccctttgacaaaccatattgcttgttca |
33568955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 131 - 319
Target Start/End: Complemental strand, 35549498 - 35549310
Alignment:
| Q |
131 |
attaagaaagtgactcacagatgcagcaaaaaccgttccatccttgtggtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatca |
230 |
Q |
| |
|
||||| |||||| || || |||||| ||||||| |||||||| |||| |||||||| | |||| ||||||| || |||||| |||||||||||||||| |
|
|
| T |
35549498 |
attaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatct |
35549399 |
T |
|
| Q |
231 |
gcagggtatggacccctgtcacgaagtgtccgatatgcttcaatgataaacatagcctcattgcctccctttgatagtccatactgctt |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||||||||| || | ||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
35549398 |
gcagggaatggacccctgtcacgaagtgtcctataagcttcaatgatgaaatttgcctcattggttccctttgatagcccatattgctt |
35549310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University