View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20620_high_41 (Length: 370)
Name: NF20620_high_41
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 24358275 - 24358491
Alignment:
| Q |
26 |
tatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaaact |
125 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
24358275 |
tatcaaatccagtgttgataaagcctcctgatggcactaaatggaaagtttattggaaaaaaatcaatggcgagatttggtttgaaaagggttggaaata |
24358374 |
T |
|
| Q |
126 |
ttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgcagta |
225 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
24358375 |
ttttactgaaaattactctcttggacatggctctttggttgtgtttgaatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagta |
24358474 |
T |
|
| Q |
226 |
gaaatagattattcttc |
242 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24358475 |
gaaatagattattcttc |
24358491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 24344338 - 24344548
Alignment:
| Q |
23 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaa |
122 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
24344338 |
gtctatcaaatccagtgttgatcaagcctccagatggcactaaatggaaagtttattggaaaaaaatcgatggtgagatttggtttgaaaagggttggaa |
24344437 |
T |
|
| Q |
123 |
actttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgca |
222 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||| ||| ||||||||| |
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| T |
24344438 |
atattttactgaaaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgca |
24344537 |
T |
|
| Q |
223 |
gtagaaataga |
233 |
Q |
| |
|
||||||||||| |
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|
| T |
24344538 |
gtagaaataga |
24344548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 24313774 - 24313994
Alignment:
| Q |
23 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaag-tcaatggtgaaatttggtttgaaaagggttgga |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
24313774 |
gtctatcaaatccagtgttgataaagcctcctgatggcactaaatggaaagtgtattggaaaaaaaatcaatggtgagatttggtttgaaaggggttgga |
24313873 |
T |
|
| Q |
122 |
aactttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgc |
221 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| | |||||| |||| ||||| ||||||||| | ||||||||||| |||| |||||| |||||| |
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|
| T |
24313874 |
aattttttactgaaaattactctcttggacatgggtgtttggtaatgttcaaatataaaggaacttcaaagtttgatgtactcatacttgaccagaatgc |
24313973 |
T |
|
| Q |
222 |
agtagaaatagattattcttc |
242 |
Q |
| |
|
| ||||||||||||||||||| |
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|
| T |
24313974 |
actagaaatagattattcttc |
24313994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 24365022 - 24364808
Alignment:
| Q |
23 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaa |
122 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||| ||||||| || || |||||||||||||||||||| |
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|
| T |
24365022 |
gtctatctaatccagtgttgatcaagcttcctgatggcactggatggaaagtttattggaaaaaaatcaatggcgagatgtggtttgaaaagggttggaa |
24364923 |
T |
|
| Q |
123 |
actttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgca |
222 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||| ||| || ||||||| |
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|
| T |
24364922 |
aacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgca |
24364823 |
T |
|
| Q |
223 |
gtagaaatagattat |
237 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24364822 |
gtagaaatagattat |
24364808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 24354610 - 24354820
Alignment:
| Q |
23 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaa |
122 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| ||||||| || ||||||||||||||||||||||| |
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|
| T |
24354610 |
gtctatcaaatccagtgttgatcaagcctccagatggcactaaatggaaagtttattggaaaaaaatcaatggagagatttggtttgaaaagggttggaa |
24354709 |
T |
|
| Q |
123 |
actttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtacacatatttgaccggaatgca |
222 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| | |||||||||||| ||||| |||| ||| | |||||||||||||||| ||| || ||||||| |
|
|
| T |
24354710 |
atattttattgaaaattactctcttggacatggttgtttggtggtgttcaaatataaaggagattcaaagtttgatgtacacatacttggccagaatgca |
24354809 |
T |
|
| Q |
223 |
gtagaaataga |
233 |
Q |
| |
|
||||||||||| |
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|
| T |
24354810 |
gtagaaataga |
24354820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 24351533 - 24351704
Alignment:
| Q |
31 |
aatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaaacttttta |
130 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
24351533 |
aatccagtgttgatcaaggctcctgatggcactaaatggaaagtttactggaaaaaaatcaatggtgagatttggtttgaaaagggttggaaacatttta |
24351632 |
T |
|
| Q |
131 |
cagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgtac |
202 |
Q |
| |
|
| |||||||||||||| |||||| | ||||||||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
24351633 |
ctgaaaattactctctacaacatggatgtttggtggtgtttaaatataaaggaacttccaagtttgatgtac |
24351704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 24369625 - 24369803
Alignment:
| Q |
23 |
gtctatctaatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaa |
122 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||| ||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
24369625 |
gtctatcaaatccagtggtgataaagactcctgatgacactaaatggaaagtttattggaaaaaaatcaatggtgagatttggtttgaaaagggttggaa |
24369724 |
T |
|
| Q |
123 |
actttttacagaaaattactctcttggacatggctctttggtggtgtttgaatatggaggaacttccatgtttgatgta |
201 |
Q |
| |
|
| |||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
24369725 |
aacttttactgaaaattactctcttggacatggttgcttggtggtgtttgaatataaaggaactttcaagtttgatgta |
24369803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 24361971 - 24362176
Alignment:
| Q |
31 |
aatccagtgttgataaagcctcctgatggcactaaatggaaaatttactggaaaaaagtcaatggtgaaatttggtttgaaaagggttggaaacttttta |
130 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| |||||||||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
24361971 |
aatccagtgttgatcaagcctcctgatggaactaaatggaaagtttattggaaaaaaatcaatggtgagatttggttcgaaaagggttggaaaactttta |
24362070 |
T |
|
| Q |
131 |
cagaaaattactctcttggacatggctctttggtggtgtttgaatat---ggaggaacttccatgtttgatgtacacatatttgaccggaatgcagtaga |
227 |
Q |
| |
|
| ||||||||||||||||||||||| | ||||||| ||||| | ||| | ||||||||| | ||| |||||||||| ||| | |||||||||||| |
|
|
| T |
24362071 |
ctgaaaattactctcttggacatgggtttttggtgttgtttaattatgaagaaggaacttctaagttccttgtacacatacttggcaagaatgcagtaga |
24362170 |
T |
|
| Q |
228 |
aataga |
233 |
Q |
| |
|
|||||| |
|
|
| T |
24362171 |
aataga |
24362176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 24364727 - 24364689
Alignment:
| Q |
318 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24364689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 24369920 - 24369958
Alignment:
| Q |
318 |
atggcttaatcggaagaaggctagacaaagatcgccttt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttt |
24369958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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