View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_43 (Length: 354)
Name: NF20620_high_43
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 2834025 - 2833704
Alignment:
| Q |
9 |
gacgttatataacaaacaagtaagaagatacgttattgtccagtaattattcaccacccataaaaatacaaaaccgtgacataagataaataacagacac |
108 |
Q |
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| T |
2834025 |
gacgttatataacaaacaagtaagaagatacgttattgtc--------attcaccacccataaaaatacaaaaccgtgacataagataaataacagacac |
2833934 |
T |
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| Q |
109 |
aactttttcccttacctaaaaaagcaaatttcatcaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgca |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833933 |
aactttttcccttacctaaaaaagcaaatttcaccaacttattaatttaaacaaagttattaatttccacttcaatatatactttcacacgaggcatgca |
2833834 |
T |
|
| Q |
209 |
agtactttttatgtgtcattgaaataacgttgttggaaactgagacaaaaacataacatcaaaccttaatatcacaaacaaacataagatctcttgtttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833833 |
agtactttttatgtgtcattgaaataacgttgttggaaactgagacaaaaacataacatcaaaccttaatatcacaaacaaacataagatctcttgtttt |
2833734 |
T |
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| Q |
309 |
cttcttagtttcctaactcgttctgttctt |
338 |
Q |
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||||||||||| ||||||||||||||||| |
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| T |
2833733 |
gttcttagtttcataactcgttctgttctt |
2833704 |
T |
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