View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_53 (Length: 306)
Name: NF20620_high_53
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 9166538 - 9166835
Alignment:
| Q |
1 |
ttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaa |
100 |
Q |
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| T |
9166538 |
ttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgaacagtaataaacacagataagaaaa |
9166637 |
T |
|
| Q |
101 |
taaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaa |
200 |
Q |
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| T |
9166638 |
taaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttcccttcataagcaggtaa |
9166737 |
T |
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| Q |
201 |
tatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgt |
298 |
Q |
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| T |
9166738 |
tatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgtacttctcctatgt |
9166835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9155121 - 9155414
Alignment:
| Q |
1 |
ttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaa |
100 |
Q |
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||||| || ||||| |||||||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
9155121 |
ttatattgtgcaaccttgttaaagttgtacctacaaaaaagcatgccaaactttgcatcatcctactgtctttgagcagtaacaaacacagataagaaaa |
9155220 |
T |
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| Q |
101 |
taaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaa |
200 |
Q |
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| T |
9155221 |
ggaagataaaacca---tccactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaa |
9155317 |
T |
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| Q |
201 |
tatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatg |
297 |
Q |
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|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9155318 |
tacgtagctgattgtgaaccttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatg |
9155414 |
T |
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