View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_56 (Length: 289)
Name: NF20620_high_56
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 54726968 - 54727110
Alignment:
| Q |
9 |
agatgaagttggtggttacaattctaggtcacacttatatgaatgttacaaattgcttaagttgtgtttgcgtgatcctcccaataattgtccagagtac |
108 |
Q |
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| T |
54726968 |
agatgaagttggtggttacaattctaggtcacacttatatgaatgttacaaattgcttaagttgtgtttgcgtgatccttccaataattgtccagagtac |
54727067 |
T |
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| Q |
109 |
tatgagaagtgtaaacaaataaatctcaaaaccaccgtagctgaaag |
155 |
Q |
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| T |
54727068 |
tatgagaagt----acaaataaatctcaaaaccatcgtagctaaaag |
54727110 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 54727134 - 54727178
Alignment:
| Q |
158 |
ttccgtgatgagagaatgtatgtggccatggtttgtgtgttattg |
202 |
Q |
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| T |
54727134 |
ttccgtgatgagagaatgtatgtggccatggtttgtgtgttattg |
54727178 |
T |
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