View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_6 (Length: 798)
Name: NF20620_high_6
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 325 - 781
Target Start/End: Complemental strand, 10050955 - 10050496
Alignment:
| Q |
325 |
actgaaactagtaaaaagtataatttca---tatatatgtttctattgtgctagacagaatgtgactactttgtgcaatgacatgacattagattggtgg |
421 |
Q |
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| T |
10050955 |
actgaaactagtaaaaagcataatttccatgtatatatgtttctattctgctagccagaatgtgactactttatgcaatgccatgacaggagagtggtgg |
10050856 |
T |
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| Q |
422 |
tttatcttaattcttaaagaaaaacattaacagggccactaactgttagtaagttgactcgatgtataaagatttaccagacgtagaagaactcgccagg |
521 |
Q |
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| T |
10050855 |
tttatcttaattcttaaagaaaaacattaacaaggccactgactgttggtaagtttactcgatgtataaagatttaccagacgtagaagaactcgacaga |
10050756 |
T |
|
| Q |
522 |
tgtttgacatcaaaaatggagccagcagctccatcagctcgtttcttgatatcatgagatcctacaacctcgtaatcccaattcccactttcatagtctt |
621 |
Q |
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| T |
10050755 |
tgtttgacatcaaaaatggagccagcagccccatcagctcgtttcttgatatcatgagatcctacaacctcgtaatcccagttcccattttcatagtctt |
10050656 |
T |
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| Q |
622 |
cacagaggaacagctctatatgccttgcatccaatgtctgcattgttcctatataagcaggagaaacatgttaaattgaataagaatattctagccttat |
721 |
Q |
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| T |
10050655 |
cacggaggaacagctctatatgccttgcatccaatgtctgcattgttcctatataagcaggagaaacatgttaaattgaataagaatattctagccttat |
10050556 |
T |
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| Q |
722 |
tctaatgcaaactcttgtggtacaaaacagtaaccacagatgaattattcatggtgttaa |
781 |
Q |
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| T |
10050555 |
tctaatgcaaacccttgcggtacaaaacagtgaccactgatgaattattcatggtgttaa |
10050496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 10051137 - 10051385
Alignment:
| Q |
18 |
tatgttttaatatttaacttaaatggcagcggtatttgattacaagtcttggattgggaaggataatgactggcaacccaaggccatgatagcttttcat |
117 |
Q |
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| T |
10051137 |
tatgttttaatttttaaattaaattgcagcggtatttgattacaagtcatggattgggaaggataatgactggcaacccaaggccatgattgcttttcat |
10051236 |
T |
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| Q |
118 |
gcagtagctgtgaacactaatttacaagaaaatgaaggttagaaacgttagcagctttcatgtccctgactcaattactgaagtaaatatcagaaaacct |
217 |
Q |
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| T |
10051237 |
gctgtagctgtgaacactaatttacaagaaaatgaaggttagaaacgttaacagctttcatgtccctgactcaattactgaagtaaatatcagaaaacct |
10051336 |
T |
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| Q |
218 |
g-tataagaataagtacaaatctgatgacagcaagacgctgcatattaa |
265 |
Q |
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| T |
10051337 |
gctataagaataagtacaaatctgatgacagcaacatgctgcatattaa |
10051385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 10050992 - 10050952
Alignment:
| Q |
261 |
attaatttgttcctggactatctatacattcattcttcactg |
302 |
Q |
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| T |
10050992 |
attaatttgttcctggactatctatacatt-attcttcactg |
10050952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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