View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_73 (Length: 250)
Name: NF20620_high_73
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_73 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 24224871 - 24224667
Alignment:
| Q |
36 |
gtgtacaagttcaagatagcagtagagcgagcaagtggcagaccaaacaaaagcaaccaatctactatgcatctataggtatatatttgtttatgttgtt |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224871 |
gtgtacaagttcaagatagcagtagagcgagcaagtggcagaccaaacaaaagcaaccaatctactatgcatctataggtatatatttgtttatgttgtt |
24224772 |
T |
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| Q |
136 |
gtggatttattcgtcagtacagtagtaattatagaaggatttattcgtcactaatttagattgagtgagccactgttagtgcagggcacctactaatcct |
235 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224771 |
gtggatttattcgtcagtacagtagtaactatagaaggatttattcgtcactaatttagattgagtgagccactgttagtgcagggcacctactaatcct |
24224672 |
T |
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| Q |
236 |
ctgtg |
240 |
Q |
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||||| |
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| T |
24224671 |
ctgtg |
24224667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 2666 - 2805
Alignment:
| Q |
36 |
gtgtacaagttcaagatagcagtagagcgagcaagtggcagaccaaacaaaagcaaccaatctactatgcatctataggtatatatttgtttatgttgtt |
135 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2666 |
gtgtacaagttcaagataacagtagagcgagcaagtggcagaccaaacaaaatcaaccaatctactatgcatctataggtatatatttgtttatggtgtt |
2765 |
T |
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| Q |
136 |
gtggatttattcgtcagtacagtagtaattatagaaggat |
175 |
Q |
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| T |
2766 |
gtggatttattcgtcagtacagtagtaactatagaaggat |
2805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 2837 - 2894
Alignment:
| Q |
183 |
tcactaatttagattgagtgagccactgttagtgcagggcacctactaatcctctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2837 |
tcactaatttagattgagtgagccactgttagtgcagggcacctactaattctctgtg |
2894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 16413954 - 16414093
Alignment:
| Q |
36 |
gtgtacaagttcaagatagcagtagagcgagcaagtggcagaccaaacaaaagcaaccaatctactatgcatctataggtatatatttgtttatgttgtt |
135 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16413954 |
gtgtacaagttcaagataacagtagagcgagcaagtggcagaccaaacaaaatcaaccaatctactatgcatctataggtatatatttgtttatggtgtt |
16414053 |
T |
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| Q |
136 |
gtggatttattcgtcagtacagtagtaattatagaaggat |
175 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
16414054 |
gtggatttattcgtcagtacagtagtaactatagaaggat |
16414093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 16414125 - 16414182
Alignment:
| Q |
183 |
tcactaatttagattgagtgagccactgttagtgcagggcacctactaatcctctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16414125 |
tcactaatttagattgagtgagccactgttagtgcagggcacctactaattctctgtg |
16414182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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