View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_74 (Length: 249)
Name: NF20620_high_74
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_74 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 38605576 - 38605343
Alignment:
| Q |
1 |
catggacaacatagattttcagatattgattacattttggagcggtaattaattaacaacaatagcatttatttcctatacacacataactatcaaccaa |
100 |
Q |
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| T |
38605576 |
catggacaacatagattttcagatattgattacattttggagcggtaattaattaacaacaatagcatttatttcctatacacacataactatcaaccaa |
38605477 |
T |
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| Q |
101 |
agcaaaaacataaagtaatcaataagaggaaattaattacctactacactgttgacaaaacctctgcattgcatttcccacaagagccctactagcctta |
200 |
Q |
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| T |
38605476 |
agcaaaaacataaagcaatcaatcagaggaaattaattacctactacactgttgacaaaacctctgcattgcatttcccacaagagccctactagcctta |
38605377 |
T |
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| Q |
201 |
gaatgcatctcacaaactttatgacgtctgtgat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38605376 |
gaatgcatctcacaaactttatgacgtctgtgat |
38605343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 45219852 - 45219947
Alignment:
| Q |
139 |
acctactacactgttgacaaaacctctgcattgcatttcccacaagagccctactagccttagaatgcatctcacaaactttatgacgtctgtgat |
234 |
Q |
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| T |
45219852 |
acctactacattgttggcagaaccgctgcatcgcatttccgacaagggctttactagcctttgaatgtatctcacaaactttatgacgtcggtgat |
45219947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 20454823 - 20454742
Alignment:
| Q |
139 |
acctactacactgttgacaaaacctctgcattgcatttcccacaagagccctactagccttagaatgcatctcacaaacttt |
220 |
Q |
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|||| |||||||||||||| || | ||||| || |||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
20454823 |
acctgctacactgttgacagaatcgttgcataacacttcccacaagtgccttactagccttagaatgcacatcacaaacttt |
20454742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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