View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_77 (Length: 247)
Name: NF20620_high_77
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_77 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 278342 - 278105
Alignment:
| Q |
10 |
aatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtgggtagtgaattgcaccag |
109 |
Q |
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| T |
278342 |
aatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtgggtagtgaattgcaccag |
278243 |
T |
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| Q |
110 |
aaattattagttttcgttctccattaataataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaacaatgctaagcatgcaat |
209 |
Q |
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| T |
278242 |
aaattattagttttcgttctccattaagaataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaacaatgctaagcatgcaat |
278143 |
T |
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| Q |
210 |
aagaaatgtcccaaacataggattatacatattttctt |
247 |
Q |
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| T |
278142 |
aagaaatgtcccaaacatagcattagacatattttctt |
278105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 289854 - 289786
Alignment:
| Q |
176 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatatttt |
244 |
Q |
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| T |
289854 |
atgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagacatatttt |
289786 |
T |
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