View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_high_8 (Length: 709)

Name: NF20620_high_8
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_high_8
NF20620_high_8
[»] chr3 (1 HSPs)
chr3 (11-691)||(53147997-53148685)
[»] chr2 (1 HSPs)
chr2 (145-404)||(11734137-11734396)
[»] chr4 (7 HSPs)
chr4 (146-406)||(5530564-5530824)
chr4 (146-416)||(5936387-5936657)
chr4 (146-352)||(5922978-5923184)
chr4 (146-404)||(38178777-38179035)
chr4 (451-527)||(5530449-5530525)
chr4 (484-529)||(5923310-5923355)
chr4 (466-548)||(38179091-38179173)
[»] chr8 (2 HSPs)
chr8 (146-401)||(40919556-40919811)
chr8 (145-269)||(45319382-45319506)
[»] chr1 (1 HSPs)
chr1 (157-403)||(45454432-45454678)
[»] chr7 (1 HSPs)
chr7 (157-300)||(34839810-34839953)


Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 11 - 691
Target Start/End: Original strand, 53147997 - 53148685
Alignment:
Q  11 cagagataaacatgaacaatgaaattcaaaggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacatt 110  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53147997 cagagataaacatgaacaatgaaattcaacggatctagatatgaatcgaaattgaacgaagttaattaagcaaatgacattgtgagaatcaagaaacatt 53148096  T
Q  111 cattaatctcaattgagtgatgagaaacataaattt--accttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatca 208  Q
        ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148097 ----aatctcaattgagtgatgagaaacataaatttttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatca 53148192  T
Q  209 actcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggacc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148193 actcagcaccttcggtataatgacctttggcccaattattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggacc 53148292  T
Q  309 agatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcctt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148293 agatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcctt 53148392  T
Q  409 tccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccatgttcgtcgcatatcacctcccagaatttggatccaatttggt 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53148393 tccaattgagtatcatttccaccttcgcttacatatttaccagttggatcaatgccgtgttcgtcgcatatcacctcccagaatttggatccaatttggt 53148492  T
Q  509 taccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttggg----------gaaatgaaat 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  53148493 taccgcattggccaccttgaacgtgcaagatctctctcatcgttgatgaagaatgagatttagggtttggtgtgtttggggaaatgaaatgaaatgaaat 53148592  T
Q  599 ggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaaatgcgggggttaat 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53148593 ggctcaaacaaaagaatatgattgagcggttccaatcgaagagagggacagatagatttatttatggaaagagagggaaatgcgggggttaat 53148685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 145 - 404
Target Start/End: Original strand, 11734137 - 11734396
Alignment:
Q  145 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 244  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |||||||    
T  11734137 ttaccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaat 11734236  T
Q  245 tattaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatc 344  Q
    |||| ||||||||||| || || ||||| |||||||||||||||||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||    
T  11734237 tattcccagcaccagactgaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatc 11734336  T
Q  345 cataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgat 404  Q
    ||||||||| || |  ||||||||||||||||||   || ||||||||||| ||||||||    
T  11734337 cataagaacagcgcgtggaacataccttccaccacttgcctcattgtaataaacattgat 11734396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 146 - 406
Target Start/End: Complemental strand, 5530824 - 5530564
Alignment:
Q  146 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 245  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5530824 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5530725  T
Q  246 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 345  Q
    ||| |||||||||   || |||||||| |||||||| || | |||||||| |||  |||| ||||| | |||||| ||||||||||| ||||||||||||    
T  5530724 attcccagcaccactctgaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatcc 5530625  T
Q  346 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcc 406  Q
    |||||||| ||||| |||||| | |||||||||   ||||||||||||||||||| |||||    
T  5530624 ataagaaccgctctcggaacaaatcttccaccacttgcttcattgtaatacacatcgatcc 5530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 146 - 416
Target Start/End: Original strand, 5936387 - 5936657
Alignment:
Q  146 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 245  Q
    |||| |||||||||||||  || || |||||||| | |||||||||||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||| ||    
T  5936387 taccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagtt 5936486  T
Q  246 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 345  Q
    |||||||||||||   |||||||| || || ||||| || | |||||||| |||| |||| ||||| | || ||| ||||| || || ||||||||||||    
T  5936487 attaccagcaccactctgtccaaagacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatcgttcccggttcaagatcc 5936586  T
Q  346 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgatcctttccaattg 416  Q
    |||||||| |||||||||||  |||||||||||   ||||||||||||||||||||||||| |||||||||    
T  5936587 ataagaaccgctctaggaacgaaccttccaccacttgcttcattgtaatacacattgatccgttccaattg 5936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 5922978 - 5923184
Alignment:
Q  146 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 245  Q
    |||| |||||||||||||||||||| |||||||| | |||||||||||||||||| ||||| | |||||| ||||| |||||||| ||||| ||||| ||    
T  5922978 taccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagtt 5923077  T
Q  246 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 345  Q
    |||||||||||||   || |||||||| || ||||| || | |||||||| |||| |||| ||||| | || ||| |||||||| || ||||||||||||    
T  5923078 attaccagcaccactctgaccaaacacaaagttatccggtctaaagatctgaccgtacggtccagaccggacactgtccatagtccccggttcaagatcc 5923177  T
Q  346 ataagaa 352  Q
    |||||||    
T  5923178 ataagaa 5923184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 146 - 404
Target Start/End: Original strand, 38178777 - 38179035
Alignment:
Q  146 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 245  Q
    |||||||||||||||| |||||||| || ||||| |  |||||||| | ||| || |||||||||||||| |||||||| ||||||||||| ||||||||    
T  38178777 taccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaatt 38178876  T
Q  246 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 345  Q
    ||| || ||||| || || || || ||||| ||||| || ||||||||||  || |||||||| || |  |     ||||| || |||||||||||||||    
T  38178877 atttccggcaccggactgaccgaaaacgaagttatccggtcgaaagatctggccaaacggaccggaacgaagcgaatccatggttccaggttcaagatcc 38178976  T
Q  346 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacattgat 404  Q
    ||||| || || |  ||||| || |||||||||  ||||||||||||||| ||||||||    
T  38178977 ataagcacggcgcgtggaacgtatcttccaccaccagcttcattgtaatagacattgat 38179035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 527
Target Start/End: Complemental strand, 5530525 - 5530449
Alignment:
Q  451 gttggatcaatgccatgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttg 527  Q
    |||||||| || ||||||||  | || | ||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  5530525 gttggatcgattccatgttcagcacaaaccacttcccagaatttggctccgatttggttaccgcattggccaccttg 5530449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 5923310 - 5923355
Alignment:
Q  484 tcccagaatttggatccaatttggttaccgcattggccaccttgaa 529  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  5923310 tcccagaattttgctccgatttggttaccgcattggccaccttgaa 5923355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 548
Target Start/End: Original strand, 38179091 - 38179173
Alignment:
Q  466 tgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcat 548  Q
    ||||||||||| || || ||||||||||||| ||| || |||||||||||||| || ||||| | ||| | ||| ||||||||    
T  38179091 tgttcgtcgcagataacttcccagaatttggctccgatctggttaccgcattgcccgccttggatgtggaggatttctctcat 38179173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 146 - 401
Target Start/End: Original strand, 40919556 - 40919811
Alignment:
Q  146 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 245  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||| |  ||||| ||||| || ||||| ||||| ||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  246 attaccagcaccagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatcc 345  Q
    ||||||||| |||  |||||||||||| || |||||||| | ||| || || || || |||||||| |  | ||| ||||| ||||| |||||||| |||    
T  40919656 attaccagctccattttgtccaaacacaaagttatcaggcctaaatatttttccaaatggaccagaacgtaaactgtccatggtacctggttcaaggtcc 40919755  T
Q  346 ataagaactgctctaggaacataccttccaccagaagcttcattgtaatacacatt 401  Q
    || ||||| |||||||||||||| |||||||||   ||||||||||| ||||||||    
T  40919756 attagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 40919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 45319506 - 45319382
Alignment:
Q  145 ttaccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaat 244  Q
    ||||||||||||||||||||||||||  | || || |  ||||||||||||||| ||||||| | ||| ||||| || || |||||||| |||||  |||    
T  45319506 ttaccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaat 45319407  T
Q  245 tattaccagcaccagattgtccaaa 269  Q
    | || || |||||||| ||||||||    
T  45319406 tgtttccggcaccagactgtccaaa 45319382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 157 - 403
Target Start/End: Original strand, 45454432 - 45454678
Alignment:
Q  157 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 256  Q
    |||||||||||||| || || || |  ||||||||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| || || || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  257 cagattgtccaaacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgc 356  Q
    | || |||||||| || || |||||||| || || |||| |||| | |||||||||||||  || |||||||| || || || |||||||| ||||| ||    
T  45454532 cggactgtccaaaaacaaagttatcaggccggaaaatctgaccgtatggaccagatctgacgctatccatagtccctggctccagatccatgagaacagc 45454631  T
Q  357 tctaggaacataccttccaccagaagcttcattgtaatacacattga 403  Q
    |||||||||  | ||||||| |   ||||| ||||| ||||||||||    
T  45454632 tctaggaacgaatcttccacaactcgcttcgttgtagtacacattga 45454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 34839953 - 34839810
Alignment:
Q  157 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaattattaccagcac 256  Q
    ||||| |||||||| |||||||||||||||||||| ||||| || ||||| |  ||||| ||||| || ||||||||||| |||||||| ||||| || |    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttaccggcgc 34839854  T
Q  257 cagattgtccaaacacgaaattatcaggacgaaagatcttaccg 300  Q
    | || || || || ||||| ||||||||||| ||||||| ||||    
T  34839853 cggactgaccgaaaacgaagttatcaggacggaagatctgaccg 34839810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University