View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_9 (Length: 669)
Name: NF20620_high_9
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21699946 - 21700076
Alignment:
| Q |
1 |
taatctaaacacgaaataaaatccaaacaccaaattacatagattcataggaaaatataaattacggaaagacattcatcttgnnnnnnntcattcattt |
100 |
Q |
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| T |
21699946 |
taatctaaacacgaagtaaaatccaaacaccaaattacatagattcataggaaaatataaattacggaaagacattcatcttgaaaaaaatcattcattt |
21700045 |
T |
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| Q |
101 |
tcatgctcatgcttcctctaacgccatgacc |
131 |
Q |
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| T |
21700046 |
tcatgctcatgcttcctctaacgccatgacc |
21700076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 493 - 615
Target Start/End: Complemental strand, 6411219 - 6411099
Alignment:
| Q |
493 |
gtgtaacttgtgttggtatagaggtccttgtgtgtcatccatatcaat-aggtacattctccataggttgtgtcgagatcaagcttagtggcataggatc |
591 |
Q |
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|||||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
6411219 |
gtgtaacttgtgttggta--gaggtcat-gtgtgtcatccatatcaatgaggtacattctccataggttgcgtcgagatcaagtttagtggcataagatc |
6411123 |
T |
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| Q |
592 |
cacaccttgaccattacaaccttg |
615 |
Q |
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| T |
6411122 |
cacaccttgactattacaaccttg |
6411099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4617071 - 4617131
Alignment:
| Q |
1 |
taatctaaacacgaaataaaatccaaacaccaaattacatagattcataggaaaatataaa |
61 |
Q |
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| T |
4617071 |
taatccaaacaccaaataaaatccaaacaccgaattacatagttacatagcaaaatataaa |
4617131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 27233798 - 27233876
Alignment:
| Q |
137 |
gctcttggagggttgaagcatggtgggtttatgcgtaaaatgttaaaacggagagtaggcatgaaagatgtaagcattt |
215 |
Q |
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| T |
27233798 |
gctcttggagggttgaagtgtgatgggttaatgtgtgaaaggttaaaacagagcgtcgagatgaaagatgtaagcattt |
27233876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 13494609 - 13494569
Alignment:
| Q |
178 |
gttaaaacggagagtaggcatgaaagatgtaagcatttgtt |
218 |
Q |
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| T |
13494609 |
gttaaaacgtagagtaggcatgaaagatgtaagcatttgtt |
13494569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 22319125 - 22319171
Alignment:
| Q |
109 |
atgcttcctctaacgccatgaccttgaggctcttggagggttgaagc |
155 |
Q |
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| T |
22319125 |
atgcttcctttaacgccatgaccttggagcttttggagggttgaagc |
22319171 |
T |
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