View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_high_97 (Length: 220)
Name: NF20620_high_97
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 2360392 - 2360574
Alignment:
| Q |
18 |
atgaaaggggtttgaaactataatatgtaaaagtgcgttgggattaatcttcattagttagtactctaatgtattttcttaatcaattataggcnnnnnn |
117 |
Q |
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| T |
2360392 |
atgaaaggggtttgaaactataatatgtaaaagtgcgttgggattaatcttcattagttatt---ctaatgtattttcttgatcaattataggctttttt |
2360488 |
T |
|
| Q |
118 |
ncatatttcaattacacattcacctactgttttcggacatctcgatatcctgcagataacgggagatttattttatcattaacttc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2360489 |
tcatatttcaattacacattcacctactgttttcggacatctcgatatcctgtagataacgggagatttattttatcattaacttc |
2360574 |
T |
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