View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20620_low_10 (Length: 657)
Name: NF20620_low_10
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 34971699 - 34971079
Alignment:
| Q |
1 |
ggttatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971699 |
ggttatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaa |
34971600 |
T |
|
| Q |
101 |
tgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34971599 |
tgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaacttaaattggttcaagttacaccacatgt |
34971500 |
T |
|
| Q |
201 |
tactgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971499 |
tactgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcatt |
34971400 |
T |
|
| Q |
301 |
agagtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971399 |
agagtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttac |
34971300 |
T |
|
| Q |
401 |
ctttgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971299 |
ctttgatgaacgagagtttccctgaattaggtttgaaaaaaagtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaat |
34971200 |
T |
|
| Q |
501 |
tggtactcctctagaaacattgttggatgaaccaaaagagtctgaagcaattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34971199 |
tggtactcctctagaaacattgttggatgaaccaaaagagtctgaagcaattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaa |
34971100 |
T |
|
| Q |
601 |
aatatagaatcgatatggaaa |
621 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
34971099 |
aatatagaatccatatggaaa |
34971079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 621
Target Start/End: Original strand, 36100690 - 36101301
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36100690 |
tatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgtcaatggtaatatccttgatagaaagtcaatgg |
36100789 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttac |
203 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||| ||||| |
|
|
| T |
36100790 |
gagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattctttcatggaaacttaaactggttcaagtaactccacaagttac |
36100889 |
T |
|
| Q |
204 |
tgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattaga |
303 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36100890 |
tgttttcaatgtcaaaaggaacatggatgaaggtgcaactgatgttgtatacaaatggcaattagttgcaccaaaattgcataaagatatttttattaga |
36100989 |
T |
|
| Q |
304 |
gtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacctt |
403 |
Q |
| |
|
| | ||| || ||| |||| |||| || || |||||| |||| ||||||||||| ||||| |||||||| || ||||||||||||||||| || | |
|
|
| T |
36100990 |
gcgcaacataatgttgttacaattagt------ggtaaaaagatagtgcaagttagtttcattggtcaatttttgggaacaattgaaagacttttgccgt |
36101083 |
T |
|
| Q |
404 |
tgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaattgg |
503 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||| |||||||||||| ||||||| || | ||||||| ||| |||||||| |
|
|
| T |
36101084 |
tgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccacatttttttggtatgatattccaattgg |
36101183 |
T |
|
| Q |
504 |
tactcctctagaaacattgttggatgaaccaaaagagtctgaagcaattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaaaat |
603 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| || || ||||| || |||||| |||||||||||||||||| ||||| ||| | || ||| || |
|
|
| T |
36101184 |
cactcctcttgaagcattgttagatgaaccaaaagatcctaaaccaatttatatcaaaggtcaatcagactatgtgaagaaaccaattcctaaaaaagat |
36101283 |
T |
|
| Q |
604 |
atagaatcgatatggaaa |
621 |
Q |
| |
|
|| ||||| ||||||||| |
|
|
| T |
36101284 |
atcgaatctatatggaaa |
36101301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 610
Target Start/End: Original strand, 21482681 - 21483278
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
21482681 |
tatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggtaatatccttgatagaaaatcaatgg |
21482780 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttac |
203 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
21482781 |
gagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgttattttgtcttggaaactcaaattggttcaagtaacctcacaggttac |
21482880 |
T |
|
| Q |
204 |
tgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattaga |
303 |
Q |
| |
|
||| || |||||||| ||||||| ||||| || ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
21482881 |
tgtttttaatgtgaagaggaatgtgaatgaaaatgtaactgatgttgtttacaaatggcaattaattgcaccaaaattgcataaagatctttttattaga |
21482980 |
T |
|
| Q |
304 |
gtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacctt |
403 |
Q |
| |
|
|| | || ||| ||| | ||||||| ||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
21482981 |
ctgcagtttaatgttgttcacattggtc---------aaaagatagtacaagttagtttcattggtcaatttttggggacaattgaaagacttttacctt |
21483071 |
T |
|
| Q |
404 |
tgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaattgg |
503 |
Q |
| |
|
|| |||| || ||||||||||||||||| ||| ||||||| | |||||||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
21483072 |
tggtgaatgaaagtttccctgaattagggttgaaaaaaagtgattgcttttcaatgccttgggttaattccactcttttttggtatgataagccaattgg |
21483171 |
T |
|
| Q |
504 |
tactcctctagaaacattgttggatgaaccaaaagagtctgaagcaattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaaaat |
603 |
Q |
| |
|
||||||||| ||| | | ||||||||||||||||| || || ||| | || |||||| ||||||||| |||||||| ||||||||| |||| ||| | |
|
|
| T |
21483172 |
tactcctcttgaagtactattggatgaaccaaaagatcctcaaccaacttatatcaaaggtcaatcagattatgtgaagaaacctattccaaaagaaatt |
21483271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 536
Target Start/End: Original strand, 36107949 - 36108481
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
36107949 |
tatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgttaagggtaatattcttgatagaaaatcaatgg |
36108048 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttac |
203 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||| |||| |
|
|
| T |
36108049 |
gagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttcatggaaacttcaattggttccggtaactccacaggttat |
36108148 |
T |
|
| Q |
204 |
tgtgttcaatgtgaaaaggaatg-cagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattag |
302 |
Q |
| |
|
|| ||| ||||||||||||||| ||| |||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36108149 |
cgttttcgatgtgaaaaggaatgtcag-tgaaggtgcaactgatattgtttacaaatggcaattaattgcaccaaaattgcataaagatcttttcattag |
36108247 |
T |
|
| Q |
303 |
agtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacct |
402 |
Q |
| |
|
|| | |||||| ||| ||| |||||||||||| ||||||||||||||| ||| ||||||| ||||| || ||||| |||| |||||||||||||||| || |
|
|
| T |
36108248 |
agcgcaacctaatgttgttcaaattggtcaagagggaaaaaaggtagtgcaaattagtttcattggtcagtttttggggaaaattgaaagacttttaact |
36108347 |
T |
|
| Q |
403 |
ttgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaattg |
502 |
Q |
| |
|
|||||||| || ||||| |||||||||||| | ||||| | |||||||||||| ||||||| ||||| ||||||| | ||||||||| |
|
|
| T |
36108348 |
ttgatgaataaggaattccccgaattaggtttgaacaaaagcgattgcttttcaatgccttggattaattccactcttttttggtatggtgagccaattg |
36108447 |
T |
|
| Q |
503 |
gtactcctctagaaacattgttggatgaaccaaa |
536 |
Q |
| |
|
|||||||||| ||| ||||||||| || ||||| |
|
|
| T |
36108448 |
gtactcctcttgaagtattgttggacgagccaaa |
36108481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 5 - 434
Target Start/End: Complemental strand, 36090385 - 36089956
Alignment:
| Q |
5 |
atggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatggg |
104 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
36090385 |
atggaaacttaatgagaaaatttggtctttctattgataataccattgatgcaaaaattgtcgatgtcaatggtaatatccttgatagaagatcaataga |
36090286 |
T |
|
| Q |
105 |
agaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttact |
204 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || | | | || ||| |
|
|
| T |
36090285 |
aaaagatcttttttgggctataagaggtggtggtggggctagttttggtgttattctttcatggaaactcaaattgattcaagtaactctagaagtgact |
36090186 |
T |
|
| Q |
205 |
gtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattagag |
304 |
Q |
| |
|
|| || |||||||||||||||| |||||| || || |||||| | ||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
36090185 |
gtttttaatgtgaaaaggaatgtgaatgaagatgtgactgatgttttctacaaatggcaattaatagcaccaaaattgcataaagatctttttattagag |
36090086 |
T |
|
| Q |
305 |
tgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttaccttt |
404 |
Q |
| |
|
||| || ||| ||| |||||||| || || |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36090085 |
ctcaacataatgttgttcaaattggtgaacatggtgaaaaggtagtgcaagttagtttcattggtcaatttttagggacaattgaaagacttttaccttt |
36089986 |
T |
|
| Q |
405 |
gatgaacgagagtttccctgaattaggttt |
434 |
Q |
| |
|
||| || ||||||||||||||||||||||| |
|
|
| T |
36089985 |
gatcaatgagagtttccctgaattaggttt |
36089956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 36080082 - 36080243
Alignment:
| Q |
1 |
ggttatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaa |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
36080082 |
ggttatggtaatttaatgagaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaa |
36080181 |
T |
|
| Q |
101 |
tgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||| || |||||||||||||| ||||||||||| |||||| |
|
|
| T |
36080182 |
tgggagaagatttattttgggctataaggggtggtggtggtgcaagttttggtgtcattctt |
36080243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 38125537 - 38125682
Alignment:
| Q |
14 |
tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct |
113 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | |||| || ||||||||||||| ||||||| ||||||||||| || |||||||| ||||| || |
|
|
| T |
38125537 |
tgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgttaatggtaggattcttgataggaaatcaatgggtgaagaact |
38125636 |
T |
|
| Q |
114 |
cttttgggctatcagaggtggtggtggtgctagttttggtgttatt |
159 |
Q |
| |
|
||||||||||| ||||| ||||| || || |||||||| |||||| |
|
|
| T |
38125637 |
tttttgggctattagaggaggtggaggagcaagttttggagttatt |
38125682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 38090703 - 38090859
Alignment:
| Q |
14 |
tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct |
113 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||| | || || || ||||||||||| |||| | | |||||||| | |||||||| |||||| | |
|
|
| T |
38090703 |
tgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgttgatggaagagtgcttgatagggaatcaatgggggaagatgt |
38090802 |
T |
|
| Q |
114 |
cttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
170 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
38090803 |
tttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaa |
38090859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 38129490 - 38129634
Alignment:
| Q |
14 |
tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct |
113 |
Q |
| |
|
||||||||||||| || | |||||||||||||| |||| || |||||| ||||||||||||||| |||||||| | || | ||||| |||||||| |
|
|
| T |
38129490 |
tgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgtcaatggtagaattcttgacaagaaaactatgggggaagatct |
38129589 |
T |
|
| Q |
114 |
cttttgggctatcagaggtggtggtggtgctagttttggtgttat |
158 |
Q |
| |
|
||||||||||| ||||| ||||| || || |||||||| ||||| |
|
|
| T |
38129590 |
tttttgggctattagaggaggtggaggagcaagttttggagttat |
38129634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 38145650 - 38145788
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
||||||| ||||||||||||| ||||||| | |||||||| || | || || ||| ||||||| || ||||| |||||||| ||||| | |||| |
|
|
| T |
38145650 |
tatggaacattgatgagaaaatatggtcttggtgttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgg |
38145749 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtg |
142 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
38145750 |
gagaggatctattttgggctataagaggtggtggaggtg |
38145788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 38072881 - 38072953
Alignment:
| Q |
98 |
caatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
170 |
Q |
| |
|
||||||| |||||| | ||||||||||| ||||||||||| || || ||||||||||| || |||||||||| |
|
|
| T |
38072881 |
caatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa |
38072953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 38086391 - 38086463
Alignment:
| Q |
98 |
caatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
170 |
Q |
| |
|
||||||| || ||| ||||||||||||| ||||||||||| || || ||||||||||| || |||||||||| |
|
|
| T |
38086391 |
caatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa |
38086463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 38058553 - 38058625
Alignment:
| Q |
98 |
caatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
170 |
Q |
| |
|
||||||| |||||| | ||||||||||| ||||||||||| || || |||||||| || || |||||||||| |
|
|
| T |
38058553 |
caatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaa |
38058625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 4 - 621
Target Start/End: Original strand, 6838710 - 6839327
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
6838710 |
tatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgttaagggtaatattcttgatagaaaatcaatgg |
6838809 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttac |
203 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || || ||||| |||| |
|
|
| T |
6838810 |
gagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattctttcatggaaacttcaactggttccggtaactccacaggttat |
6838909 |
T |
|
| Q |
204 |
tgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattaga |
303 |
Q |
| |
|
|| ||| ||||||||||| ||| |||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838910 |
cgttttcgatgtgaaaaggtatgttagtgaaggtgcaactgatattgtttacaaatggcaattaattgcaccaaaattgcataaagatcttttcattaga |
6839009 |
T |
|
| Q |
304 |
gtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacctt |
403 |
Q |
| |
|
||| |||||| ||| ||| |||||||||| | ||||||||||||||| ||||||||||| ||||| |||||||| || | |||||||||||||||| || |
|
|
| T |
6839010 |
gtgcaacctaatgttgttcaaattggtcaggagggaaaaaaggtagtgcaagttagtttcattggtcaatttttgggaaaaattgaaagacttttagttt |
6839109 |
T |
|
| Q |
404 |
tgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaattgg |
503 |
Q |
| |
|
|| ||| ||| ||||| |||||||||||| | ||||| | |||||||||||| ||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
6839110 |
tgttgagtaagaaattccccgaattaggtttgaacaaaagcgattgcttttcaatgccttggattaattccactcttttttggcatgataagccaattgg |
6839209 |
T |
|
| Q |
504 |
tactcctctagaaacattgttggatgaaccaaaagagtctgaagcaattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaaaat |
603 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| || || || || || || ||| | ||||||| |||||||| ||||||||| | ||| || | |
|
|
| T |
6839210 |
tactcctcttgaagcattgttggatgaaccaaaggatcctcaaccactttataaaaaatataaatcagattatgtgaagaaacctattcctaaggaagct |
6839309 |
T |
|
| Q |
604 |
atagaatcgatatggaaa |
621 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
6839310 |
atagaatccatatggaaa |
6839327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 537
Target Start/End: Original strand, 8338574 - 8339101
Alignment:
| Q |
4 |
tatggaaatttgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgg |
103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
8338574 |
tatggaaatttgatgagaaagtttggtctttctgttgataatatcattgacgcaaaaattattgatgtcaatggtaatactcttgatagaaaatcaatgg |
8338673 |
T |
|
| Q |
104 |
gagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaaactcaaattggttcaagttacaccacatgttac |
203 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||| ||| | |
|
|
| T |
8338674 |
gagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttcatggaaacttaaattggttcaaataactccacaagtttc |
8338773 |
T |
|
| Q |
204 |
tgtgttcaatgtgaaaaggaatgcagatgaaggtgcaaccgatgttatttacaaatggcaattagttgcaccaaaattgcataaagatcttttcattaga |
303 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8338774 |
agttttcaatgtgaaaagaaatatggatgaaggtgcaactgatgttgtttacaaatggcaattagttgcaccaaaattgcataaagatatttttattaga |
8338873 |
T |
|
| Q |
304 |
gtgaaacctattgtagttaaaattggtcaagggggaaaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacctt |
403 |
Q |
| |
|
||| ||| || ||| ||||||||| || || |||||| |||| ||||||||||| ||||| |||||||| || ||||||||||| ||| |||||| |
|
|
| T |
8338874 |
gtgcaacataatgttgttaaaattagt------ggtaaaaagatagtgcaagttagtttcattggtcaatttttgggcacaattgaaaggcttatacctt |
8338967 |
T |
|
| Q |
404 |
tgatgaacgagagtttccctgaattaggtttgnnnnnnngtgattgtatgtcaatgccttgggttaattcaactctcttttggtggaataagccaattgg |
503 |
Q |
| |
|
|| ||| |||||||||||| |||| | |||| ||||||| | | |||||||||||| ||||| ||||| ||||||| | ||||||||||| |
|
|
| T |
8338968 |
tggtgagtgagagtttccctaaattggctttgaagaaaagtgattgctttttaatgccttgggtaaattccactcttttttggtatgacaagccaattgg |
8339067 |
T |
|
| Q |
504 |
tactcctctagaaacattgttggatgaaccaaaa |
537 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8339068 |
tactcctcttgaagcattgttggatgaaccaaaa |
8339101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 11933750 - 11933900
Alignment:
| Q |
14 |
tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct |
113 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| || || ||| |||| | ||||| ||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
11933750 |
tgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatct |
11933849 |
T |
|
| Q |
114 |
cttttgggctatcagaggtggtggtggtgctagttttggtgttattctttc |
164 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
11933850 |
tttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc |
11933900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 11946971 - 11947121
Alignment:
| Q |
14 |
tgatgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatct |
113 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| || || ||| |||| | ||||| ||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
11946971 |
tgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgatagaaaatcaatgggagaagatct |
11947070 |
T |
|
| Q |
114 |
cttttgggctatcagaggtggtggtggtgctagttttggtgttattctttc |
164 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
11947071 |
tttttgggctattaaaggtggtggtggagctagctttggtgttgttctttc |
11947121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 11917650 - 11917729
Alignment:
| Q |
85 |
cttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttc |
164 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
11917650 |
cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc |
11917729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 11835139 - 11834995
Alignment:
| Q |
17 |
tgagaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctctt |
116 |
Q |
| |
|
||||||||| |||| | ||| |||||||||| ||||| || ||||||||||||| || || | || | |||| || |||||||| |||||||| || |
|
|
| T |
11835139 |
tgagaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggaaggcttttgaataggaaatcaatgggtgaagatctttt |
11835040 |
T |
|
| Q |
117 |
ttgggctatcagaggtggtggtggtgctagttttggtgttattct |
161 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
11835039 |
ttgggctatacgaggcggtggtggtgctagttttggtgttgttct |
11834995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 11821228 - 11821369
Alignment:
| Q |
20 |
gaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttg |
119 |
Q |
| |
|
|||||| |||| | ||| |||||||||| ||||| || ||||||||||||| || |||| || | |||| || |||||||| |||||||| ||||| |
|
|
| T |
11821228 |
gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaataggaaatcaatgggtgaagatcttttttg |
11821327 |
T |
|
| Q |
120 |
ggctatcagaggtggtggtggtgctagttttggtgttattct |
161 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
11821328 |
ggctatactaggtggtggtggtgctagtttcggtgttgttct |
11821369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 11787122 - 11787011
Alignment:
| Q |
52 |
gacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttg |
151 |
Q |
| |
|
||||||||||| || |||| || || |||||||| |||||||| || ||||| || || ||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
11787122 |
gacgcaaaaatagtcgatgcgaacggaaatattctcgatagaaaatctatgggggaggaattcttttgggctattagaggtggtggaggtggaagttttg |
11787023 |
T |
|
| Q |
152 |
gtgttattcttt |
163 |
Q |
| |
|
|| || |||||| |
|
|
| T |
11787022 |
gtattcttcttt |
11787011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2152477 - 2152562
Alignment:
| Q |
67 |
gatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttgg |
152 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||| ||| | |||||||||| |
|
|
| T |
2152477 |
gatgtaaatgggaaaattcttgatagaaaatcaatgggagaagatgttttttgggctattagaggaggtagtgctactagttttgg |
2152562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2176136 - 2176221
Alignment:
| Q |
67 |
gatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttgg |
152 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||||||||||||| | ||||||||||| ||||| || ||| | |||||||||| |
|
|
| T |
2176136 |
gatgtaaatgggaaaattcttgatagaaaatcaatgggagaagatgttttttgggctattagaggaggcagtgctactagttttgg |
2176221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 2196691 - 2196779
Alignment:
| Q |
82 |
attcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa |
170 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| | |||||||| || ||||| ||| ||| | |||||||||| || |||||| ||||||| |
|
|
| T |
2196691 |
attcttaatagaaaatcaatgggagaagatgttttttgggccattagaggaggtagtgcttctagttttggagtcattcttgcatggaa |
2196779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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