View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_108 (Length: 204)
Name: NF20620_low_108
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_108 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 14410010 - 14409879
Alignment:
| Q |
43 |
aatcggcatatattgaaaagccaagcacaagaagtgcaaattggcaaagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
142 |
Q |
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| T |
14410010 |
aatcggcatatattgaaaaggcaagcacaagaagtgcaaattggcaaagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
14409911 |
T |
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| Q |
143 |
gtaagggaaaatgcagaaaaataagtgcaaca |
174 |
Q |
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| T |
14409910 |
gtaagggaaaatgcagaaaaataagtgcaaca |
14409879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 7315606 - 7315659
Alignment:
| Q |
89 |
aagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
142 |
Q |
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| T |
7315606 |
aagctgctacaactgataaacaaacccctgcctactgttaaaaacgcagcagca |
7315659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 37046508 - 37046639
Alignment:
| Q |
43 |
aatcggcatatattgaaaagccaagcacaagaagtgcaaattggcaaagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
142 |
Q |
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| T |
37046508 |
aatcggcatatattgaaaagccaaacacaagaagtgcaaattggcaaagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
37046607 |
T |
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| Q |
143 |
gtaagggaaaatgcagaaaaataagtgcaaca |
174 |
Q |
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| T |
37046608 |
gtaagggaaaatgcagaaaaattagtgcaaca |
37046639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 7501228 - 7501175
Alignment:
| Q |
89 |
aagctgatacaactgaaaaacaaacccctgcatactgtcattaacgcagcagca |
142 |
Q |
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| T |
7501228 |
aagctgctacaactgataaacaaacccctgcctactgttaaaaacgcagcagca |
7501175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 40295870 - 40295947
Alignment:
| Q |
50 |
atatattgaaaagccaagcacaagaagtgcaaattggcaaagctgatacaactgaaaaacaaacccctgcatactgtca |
128 |
Q |
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| T |
40295870 |
atatattgataagccaagcacaagaagtgcaaaatggc-aagctgatacaattgaaaaacaagcccctgcctactgtca |
40295947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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