View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_13 (Length: 612)
Name: NF20620_low_13
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 52251171 - 52250571
Alignment:
| Q |
1 |
ccagaaaactgcatactctgttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52251171 |
ccagaaaactgcatactctgttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgat |
52251072 |
T |
|
| Q |
101 |
caagttttggagaaatctgtaatgtatcagagagctatgacagggaatttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
52251071 |
caagttttggagaaatctgtaatgtatcagagagctatgacagggaatttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaa |
52250972 |
T |
|
| Q |
201 |
ttttggttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52250971 |
ttttggttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaa |
52250872 |
T |
|
| Q |
301 |
ggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52250871 |
ggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgt |
52250772 |
T |
|
| Q |
401 |
gaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaag |
500 |
Q |
| |
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| T |
52250771 |
gaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaag |
52250672 |
T |
|
| Q |
501 |
ctagggataatattgctcatgatttgttgcatcgtggtcgtgttggcaatacttttttataggnnnnnnnnnatgttttctgttatgtcatgatgatgat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
52250671 |
ctagggataatattgctcatgatttgttgcatcgtggtcgtgttggcaatacttttttataag--tttttttatgttttctgttatgtcatgatgatgat |
52250574 |
T |
|
| Q |
601 |
gat |
603 |
Q |
| |
|
||| |
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| T |
52250573 |
gat |
52250571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 515
Target Start/End: Complemental strand, 52262800 - 52262300
Alignment:
| Q |
14 |
tactctgttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgatcaagttttggaga |
113 |
Q |
| |
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|||||| |||||||||| ||||||||||| |||||||| |||||||| | || | | |||||| |||||||||||| |||||| | ||||| |||| |
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| T |
52262800 |
tactcttttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgaga |
52262701 |
T |
|
| Q |
114 |
aatctgtaatgtatcagagagctatgacaggga-atttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttcctt |
212 |
Q |
| |
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|||| | ||| | ||||| | ||| ||||| ||||||||||| ||||||||| ||||||| |||||| ||| || ||||||| |||||||||||||| |
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| T |
52262700 |
aatcggatttgtttaagagaattgtga-agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttcctt |
52262602 |
T |
|
| Q |
213 |
atacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaag |
312 |
Q |
| |
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|| ||||| |||||||||||||||| |||||||||||||||||||| || || |||||||||| | | ||| ||||| ||||||| | ||||||| || |
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| T |
52262601 |
atgcacataagaatcttacttggacgcagcacgcgtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggag |
52262502 |
T |
|
| Q |
313 |
gtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaat |
412 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||| |||||||| |||||| || | |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
52262501 |
gtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaat |
52262402 |
T |
|
| Q |
413 |
gagaagatggatcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggataata |
512 |
Q |
| |
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|||||||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
52262401 |
gagaagatggat-ctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggataata |
52262303 |
T |
|
| Q |
513 |
ttg |
515 |
Q |
| |
|
||| |
|
|
| T |
52262302 |
ttg |
52262300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 428
Target Start/End: Original strand, 3698867 - 3698992
Alignment:
| Q |
303 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
402 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| | | || ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtga |
3698966 |
T |
|
| Q |
403 |
aatgaggaatgagaagatggatcctg |
428 |
Q |
| |
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|||| |||||| |||||||||| |
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| T |
3698967 |
gatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 303 - 428
Target Start/End: Original strand, 3702555 - 3702680
Alignment:
| Q |
303 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
402 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
3702654 |
T |
|
| Q |
403 |
aatgaggaatgagaagatggatcctg |
428 |
Q |
| |
|
|||| |||||| |||||||||| |
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|
| T |
3702655 |
gatgaaaggtgagaaaatggatcctg |
3702680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 3702272 - 3702336
Alignment:
| Q |
23 |
actgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttc |
87 |
Q |
| |
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|||||||||||||| |||||| | || || |||||||||||||||| | |||||| |||||||| |
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| T |
3702272 |
actgttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttc |
3702336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 17602848 - 17602953
Alignment:
| Q |
359 |
cctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaa |
458 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||||||| || | |||||| | |||||| || |||||| ||||| ||||||||||||||| |
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|
| T |
17602848 |
cctgttgttcttggtgcttgttgtgtgcttcataatatttgtgagattatgaatgaagaaatggatgatgaatggaagtttgaggtttttgatgatgaaa |
17602947 |
T |
|
| Q |
459 |
tggttg |
464 |
Q |
| |
|
|||||| |
|
|
| T |
17602948 |
tggttg |
17602953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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