View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_low_16 (Length: 600)

Name: NF20620_low_16
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_low_16
NF20620_low_16
[»] chr5 (6 HSPs)
chr5 (8-600)||(10243508-10244091)
chr5 (256-513)||(10224858-10225114)
chr5 (348-600)||(10233030-10233281)
chr5 (8-65)||(32522570-32522627)
chr5 (1-64)||(34445296-34445359)
chr5 (5-65)||(7065626-7065686)
[»] chr2 (5 HSPs)
chr2 (1-67)||(11021091-11021157)
chr2 (1-68)||(25997355-25997422)
chr2 (5-42)||(9113984-9114021)
chr2 (16-69)||(25931622-25931675)
chr2 (17-65)||(11565042-11565090)
[»] chr3 (6 HSPs)
chr3 (1-67)||(37914569-37914633)
chr3 (1-69)||(31836446-31836514)
chr3 (7-69)||(18093819-18093881)
chr3 (1-53)||(49658341-49658393)
chr3 (1-67)||(28732494-28732560)
chr3 (8-65)||(29212885-29212942)
[»] chr1 (5 HSPs)
chr1 (4-69)||(14231084-14231149)
chr1 (16-69)||(31032492-31032545)
chr1 (7-65)||(5347003-5347061)
chr1 (5-70)||(20814780-20814845)
chr1 (1-65)||(49166643-49166707)
[»] scaffold0777 (1 HSPs)
scaffold0777 (1-67)||(4751-4817)
[»] chr7 (2 HSPs)
chr7 (5-69)||(17801419-17801483)
chr7 (7-65)||(15996157-15996215)
[»] chr8 (4 HSPs)
chr8 (1-43)||(41897627-41897669)
chr8 (7-65)||(8168948-8169006)
chr8 (4-69)||(33072654-33072719)
chr8 (1-65)||(24185573-24185637)
[»] chr4 (2 HSPs)
chr4 (4-69)||(22048855-22048920)
chr4 (5-69)||(51303841-51303905)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 10244091 - 10243508
Alignment:
Q  8 attgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaaccaagccaagcaaatctgagtaacacctagaacaagcaac 107  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||     |||||  ||||||||||||||||||||||    
T  10244091 attgaataattaatgtatctattcacatttataggtcagatacattaattatccaatgaatcaagc-----aaatcatagtaacacctagaacaagcaac 10243997  T
Q  108 ctaagccataaaactttcagtacatataaaatcaattaacaatggagctacttgaaaagnnnnnnnnnnctactccaaatcaagatcagtacattacatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||||||||||||||||||||||    
T  10243996 ctaagccataaaactttcagtacatataaaatcaattaacaatggggctacttgaaaa------aaaaactactccaaatcaagatcagtacattacatt 10243903  T
Q  208 cgttttagcaacctagttttatcatgatatcaacannnnnnnnnccccaaatcagtttcacgttcatctgcacgtttactctctacaatggaatttaaac 307  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  10243902 cgttttagcaacctagttttatcatgatatcaacattttttt--ccccaaatcagtttcacattcatctgcacgtttactctctagaatggaatttaaac 10243805  T
Q  308 aggagttcttcataatacttttatatgcaattaaagaccatcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttc 407  Q
    | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10243804 aagagttcttcataatacttttatattcaattaaagactatcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttc 10243705  T
Q  408 cattcaacatatttaacatgtgtatgtacaacctactt----agttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtg 503  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10243704 cattcaacatatttaacatgtgtatgtacaacctacttagttagttcatgattgaaaaggtagaactgccacaaagcaattcttaatttttcaagtagtg 10243605  T
Q  504 attcatgtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatcaa 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  10243604 attcatgtggtagcacttcagtttccatatgatacacaaacttgtacaaatcattctgcatgtaattaacccataaacatgccattccaactatcaa 10243508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 256 - 513
Target Start/End: Complemental strand, 10225114 - 10224858
Alignment:
Q  256 aaatcagtttcacgttcatctgcacgtttactctctacaatggaatttaaacaggagttcttcataatacttttatatgcaattaaagaccatcacaagt 355  Q
    ||||||| ||||| |||||||||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||    
T  10225114 aaatcagattcacattcatctgcacgtttactctatataatggaatttaaactagagttcttcataatacttttatatgcaattaaagactatcacaagt 10225015  T
Q  356 ttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac----ttagttca 451  Q
    |||||||| ||||  ||||||||||||    |   ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    ||||||||    
T  10225014 ttgaaactgcaaagttatgtgtaaatt----tcagtatattttaaaagcttccattcagcatctttaacatgtgtatgtacaacctacttagttagttca 10224919  T
Q  452 tgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtgg 513  Q
    || |||||||| ||||| |||||| |||||||||||| ||||||||| |||| |||||||||    
T  10224918 tgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcatgtgg 10224858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 348 - 600
Target Start/End: Complemental strand, 10233281 - 10233030
Alignment:
Q  348 tcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac---- 443  Q
    |||||| | ||||||||||||||||||||||| || || |   ||||||||||||| ||||||| |  || |||||||||||||| | ||||||||        
T  10233281 tcacaactctgaaactacaaaagtatgtgtaatttttttt---tatattttaaaagcttccattaagtatctttaacatgtgtattttcaacctacgtac 10233185  T
Q  444 ----ttagttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgataca 539  Q
        |||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||     
T  10233184 ttagttagttcatggttgaaaaggtagaactaccacaa-gcaattcttaatttttcaagtagtgattcatgt-gtagcactccagctgccatatgatact 10233087  T
Q  540 caaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatcaa 600  Q
    |||||||||||||| ||||||||| |    ||||||||| ||||| | |||||||||||||    
T  10233086 caaacttgtacaaaccattctgcatg----taacccatagacatggctttccaactatcaa 10233030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 32522570 - 32522627
Alignment:
Q  8 attgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||| |||| |||||    
T  32522570 attgaataattaatgtatgcagtcacatttatagatcagatacattaattattcaatg 32522627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34445296 - 34445359
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaat 64  Q
    ||||||||| |||| ||||| ||||||| ||||||||| ||| || ||||||||||||| ||||    
T  34445296 taggttcatggaataattaaggtatctagtcacatttagagaccaaatacattagttattcaat 34445359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 7065686 - 7065626
Alignment:
Q  5 ttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    |||||||||| ||||||||||||  |||||||||||  || ||| |||||||||| |||||    
T  7065686 ttcattgaataattaatgtatctgatcacatttatatgtctgatgcattagttattcaatg 7065626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11021091 - 11021157
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaa 67  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11021091 taggttcattgaatagttaatgtatctattcacatttataggtcagatacattagttatccaatgaa 11021157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25997422 - 25997355
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaac 68  Q
    |||||| ||||||| |||||| ||| |  |||||| |||| |||||||||||||||||| ||||||||    
T  25997422 taggtttattgaatgattaatatatatgatcacatctataaatcagatacattagttattcaatgaac 25997355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 9114021 - 9113984
Alignment:
Q  5 ttcattgaattattaatgtatctattcacatttataga 42  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  9114021 ttcattgaataattaatgtatctagtcacatttataga 9113984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 25931622 - 25931675
Alignment:
Q  16 attaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    |||||||||| |  |||||||||||||||| ||||||| ||||| |||||||||    
T  25931622 attaatgtatttggtcacatttatagatcaaatacattggttattcaatgaacc 25931675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 11565090 - 11565042
Alignment:
Q  17 ttaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    |||||||||| | ||||||||||||||||| ||||||| |||| |||||    
T  11565090 ttaatgtatccagtcacatttatagatcaggtacattaattattcaatg 11565042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37914633 - 37914569
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaa 67  Q
    |||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  37914633 taggttcattgaataattaatgtatctat--acatttatagttcagatacattagttatccaatgaa 37914569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31836446 - 31836514
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    |||||||||||||| |||||||||| || ||| ||||||||| || |||||||| |||| |||||||||    
T  31836446 taggttcattgaataattaatgtatttagtcatatttatagaccaaatacattaattattcaatgaacc 31836514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 18093819 - 18093881
Alignment:
Q  7 cattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    |||||||| ||||||||||||  |||||||||||| |||||||||||| |||| |||| ||||    
T  18093819 cattgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaacc 18093881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49658393 - 49658341
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacatt 53  Q
    |||||||||||||| |||| |||||||  |||||||||||||||| |||||||    
T  49658393 taggttcattgaataattattgtatctgatcacatttatagatcatatacatt 49658341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28732494 - 28732560
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaa 67  Q
    |||||||||||||| | |||||||| || ||||||||||||| | ||| ||||||| || |||||||    
T  28732494 taggttcattgaataactaatgtatttagtcacatttatagaccggattcattagtcattcaatgaa 28732560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 29212885 - 29212942
Alignment:
Q  8 attgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    ||||||| || |||||||| | |||||||||||| |||||||||||| |||| |||||    
T  29212885 attgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaatg 29212942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 14231084 - 14231149
Alignment:
Q  4 gttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    ||||||||||| |||||||||| || ||||| ||||||| |||||||||||||||| |||||||||    
T  14231084 gttcattgaatgattaatgtatttaatcacaattatagaccagatacattagttattcaatgaacc 14231149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 31032492 - 31032545
Alignment:
Q  16 attaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    ||||||||||||| ||||||||||||| || |||||||||||||  ||||||||    
T  31032492 attaatgtatctagtcacatttatagaccaaatacattagttatttaatgaacc 31032545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5347003 - 5347061
Alignment:
Q  7 cattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    |||||||| ||||||||||| ||||||||||||| || ||||| |||| |||| |||||    
T  5347003 cattgaataattaatgtatccattcacatttatatattagatatattaattattcaatg 5347061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 20814845 - 20814780
Alignment:
Q  5 ttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacca 70  Q
    |||||| ||| ||||||||||||  |||||||||||  ||||||||||| ||||| ||||| ||||    
T  20814845 ttcattaaataattaatgtatcttgtcacatttatatgtcagatacattggttattcaatgtacca 20814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49166643 - 49166707
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    ||||| |||| ||| ||||||||||| | |||||||||||| | |||||||||| |||| |||||    
T  49166643 taggtacattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatg 49166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4817 - 4751
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaa 67  Q
    |||||| || |||| ||||||||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  4817 taggtttatggaataattaatgtatctagtcacatttatatatcaaatacattagttattcaatgaa 4751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 17801483 - 17801419
Alignment:
Q  5 ttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    |||||||||| ||||||||||||| | ||||||||| || |||||||||||||||  ||||||||    
T  17801483 ttcattgaataattaatgtatctagtaacatttataaattagatacattagttattaaatgaacc 17801419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 15996215 - 15996157
Alignment:
Q  7 cattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    |||||||| ||||||||||| | |||| ||||||| |||||||||||| |||| |||||    
T  15996215 cattgaataattaatgtatccaatcacgtttataggtcagatacattaattattcaatg 15996157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41897627 - 41897669
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagat 43  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  41897627 taggttcattgaataattaatgtatctaatcacatttatagat 41897669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 8169006 - 8168948
Alignment:
Q  7 cattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    |||||||| |||||| |||  | ||||||||||||||||||||||||| |||| |||||    
T  8169006 cattgaatgattaatatatgcaatcacatttatagatcagatacattaattattcaatg 8168948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 33072719 - 33072654
Alignment:
Q  4 gttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    ||||||||||| ||||||| ||||| | ||||||||||| ||   ||||||||||| |||||||||    
T  33072719 gttcattgaataattaatgcatctagtgacatttatagaccaatcacattagttattcaatgaacc 33072654  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24185637 - 24185573
Alignment:
Q  1 taggttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatg 65  Q
    ||||| |||||||| ||||||||||| | |||||||||||| | ||||| |||| |||| |||||    
T  24185637 taggtacattgaataattaatgtatccagtcacatttataggttagatatattaattattcaatg 24185573  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 22048855 - 22048920
Alignment:
Q  4 gttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    ||||||||||| |||||||||| |  ||||||| ||| | |||||||||||| ||| |||||||||    
T  22048855 gttcattgaataattaatgtatttgatcacattaatacaccagatacattagctattcaatgaacc 22048920  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 51303905 - 51303841
Alignment:
Q  5 ttcattgaattattaatgtatctattcacatttatagatcagatacattagttatccaatgaacc 69  Q
    |||||||||| | ||||||||||| ||||||||||| |  |||||| ||||||||  ||||||||    
T  51303905 ttcattgaataactaatgtatctagtcacatttataaactagatacgttagttatttaatgaacc 51303841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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