View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_17 (Length: 583)
Name: NF20620_low_17
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Original strand, 4026900 - 4027468
Alignment:
| Q |
8 |
acatcatcataaacttatcaacattcaaaataactgaaatcctaacataacatttctaggttaaaactaattgtacaaaatttctaacaaaacagtgcgt |
107 |
Q |
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| T |
4026900 |
acataatcagaaacttatcatcattcaaaataactgaaatcctaacataacatttctaggttaaaactaattgtacaaaatttctaaccaaacagtgcgt |
4026999 |
T |
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| Q |
108 |
tattgaattggaagctagggtttacaaactagctcaacgacaaaa--aacgcagaaattgaaattaagactgaactataattacctgaactaatcgacta |
205 |
Q |
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| T |
4027000 |
tattgaattggaagctagggtttacaaactagctcaacgacaaaaaaaacgcagaaattgaaattaagactgaactataattacctgaactaatcgacta |
4027099 |
T |
|
| Q |
206 |
ctgtagttaggttgtagcgttgatgaacaagatctagaaacggcggcgccagtgacggtggtgcctccgttgagcttcttatccattattattcagcaaa |
305 |
Q |
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| T |
4027100 |
ctgtagttaggttgtagcgttgatgaacaagatctagaaacggcggcgccagtgacggtggtgcctccgttgagcttcttatccattattattcagcaaa |
4027199 |
T |
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| Q |
306 |
acggtgaactccgtgaaattttcaagaacacggagatgctcggagattggggaatggaggtgactacagtttaccggagatacgccgtcgatggtcggag |
405 |
Q |
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| T |
4027200 |
acggtgaactccgtgaaattttcaagaacacggagatgctcggagattggggaatggaggtgactacagtttaccggagatacgccgtcgatggtcggag |
4027299 |
T |
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| Q |
406 |
agaataatgggaagctttcggagagggaaaccttacacagattggagttgaagggtttttgaaacacttg------nnnnnnnnnncatttcaacttatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
4027300 |
agaataatgggaagctttcggagagggaaaccttacacagattggagttgaagggtttttgaaacacttgttttttttttctttttcgtttcaacttatt |
4027399 |
T |
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| Q |
500 |
tgggctgaacggtaatgcatcttggacccgaatttcttatatttcctacttctataacatacaaaaatt |
568 |
Q |
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| T |
4027400 |
tgggctgaacggtaatgcatcttggacccgaatttcttatatttcctacttctataacatacaaaaatt |
4027468 |
T |
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