View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_18 (Length: 574)
Name: NF20620_low_18
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 5980824 - 5980304
Alignment:
| Q |
19 |
attggttagtggagtttgcattggcatgattttgatggggtttattatggtaaatctttctggttgttttgaatatggggaacaaacaagttttcttgtt |
118 |
Q |
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| T |
5980824 |
attggttagtggagtttgcattggcatgattttgatggggtttattatggtaaatctttctggttgttttgaatatggggaacaaacaagttttcttgtt |
5980725 |
T |
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| Q |
119 |
ccaacataggaggaaagtattggtaaactttgcatttcttgttgtagttatatgatttgatttgtaatttggatttagatcagttcattctattatttgg |
218 |
Q |
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| T |
5980724 |
ccaacataggaggaaagtattggtaaactttgcatttcttgttgtagttatatgatttgatttgtaatttggatttagatcagttcattctattatttgg |
5980625 |
T |
|
| Q |
219 |
atttaaaattaatgtatatgtataaataatgtgtgaaaattaaaagtccatacatattcaagattcaagaatggttcaactggaagaacaaaagctgagt |
318 |
Q |
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| T |
5980624 |
atttaaaattaatgtatatgtataaataatgtgtgaaaattaaaagtccatacatattcaagattcaagaatggttcaactggaagaacaaaagctgagt |
5980525 |
T |
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| Q |
319 |
tgcataccataggaaaattattaaaactgcgaagcaactgagagttcagcttactgaaacaattcaatggattcacttcatacatcttcgaaacaaaaaa |
418 |
Q |
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| T |
5980524 |
tgcataccacaggaaaattattaaaactgcgaagcaactgagagttcagcttactgaaacaattcaatggattcacttcatacatcttcgaaacaaaaaa |
5980425 |
T |
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| Q |
419 |
tatattagcatttttgagtcaaaatgaaaacacaagtgcgctggctttacaaagttcatgttttcaaaccctnnnnnnnncccagatgacaatgaagatt |
518 |
Q |
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| T |
5980424 |
tatattagcatttttgagtcaaaatgaaaacacaagtgcgctggctttacaaagttcatgttttcaaaccctaaaaaaaacccagatgacaatgaagatt |
5980325 |
T |
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| Q |
519 |
actattttcatactttgttcc |
539 |
Q |
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| T |
5980324 |
actattttcatactttgttcc |
5980304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 13025109 - 13024972
Alignment:
| Q |
19 |
attggttagtggagtttgcattggcatgattttgatggggtttattatggtaaatctttctggttgttttgaatatggggaacaaacaagttttcttgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| || || |
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| T |
13025109 |
attggttagtggagtttgcattggcatgattttgatggggtttattatggtgaatctttctggttgctttgaatatggggaacaaacaaggtttgttatt |
13025010 |
T |
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| Q |
119 |
ccaacataggaggaaagtattggtaaactttgcatttc |
156 |
Q |
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| T |
13025009 |
ccaacatagaaagaaagtattggtaaactttgcatttc |
13024972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 13024934 - 13024865
Alignment:
| Q |
147 |
tttgcatttcttgttgtagttatatgatttgatttgtaatttggatttagatcagttcattctattattt |
216 |
Q |
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| T |
13024934 |
tttgcatttcttgttgtagttatatgatttgatttgtaatttggatttagatcagttcattctattattt |
13024865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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