View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20620_low_19 (Length: 553)

Name: NF20620_low_19
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20620_low_19
NF20620_low_19
[»] chr8 (9 HSPs)
chr8 (92-535)||(11869225-11869668)
chr8 (87-216)||(11876660-11876789)
chr8 (87-216)||(11891667-11891796)
chr8 (235-365)||(11876022-11876152)
chr8 (235-365)||(11891029-11891159)
chr8 (349-425)||(11875807-11875884)
chr8 (349-425)||(11890814-11890891)
chr8 (495-533)||(11875736-11875774)
chr8 (495-533)||(11890743-11890781)
[»] chr4 (1 HSPs)
chr4 (67-172)||(32931052-32931158)
[»] chr3 (1 HSPs)
chr3 (67-200)||(49731160-49731294)
[»] chr1 (2 HSPs)
chr1 (61-172)||(27882407-27882519)
chr1 (87-124)||(28980473-28980510)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 92 - 535
Target Start/End: Complemental strand, 11869668 - 11869225
Alignment:
Q  92 acaaacctaaagcttcgccaacaggaacataacccaaagagagaaattcatggttttggatagaacaaaaactccatcatcattgggcacacatatatca 191  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11869668 acaaacctaaagcttctccaacaggaacataacccaaagagagaaattcatggttttggatagaacaaaaactccatcatcattgggcacacatatacca 11869569  T
Q  192 atgcttatataattcatatattgcgnnnnnnnnnnnnnnnnnnttatgtcaaatatttttgactcggttgataagaagttaacactctcatctcttttga 291  Q
    ||||||||||||||||| |||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11869568 atgcttatataattcatgtattgcgaaaaaccaaaaaagaaaattatgtcaaatatttttgactcggttgataagaagttaacactctcatctcttttga 11869469  T
Q  292 tagttgatctgtatgtgtaactctataaacattctttaactttgaggtccggcttcaattcacttactctttttatcataaataaaaaattatttctttg 391  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11869468 tagttgatttgtatgtgtaactctataaacattctttaactttgaggtccggcttcaattcacttactctttttatcataaataaaaaattatttctttg 11869369  T
Q  392 gccggtaacatagttgttggaaccaatatttaaaaacaattgatacaaaattannnnnnnnnnnnnngaaggaattgatacaaaattataaacataacgt 491  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  11869368 gccggtaacatagttgttggaaccaatatttaaagacaattgatacaaaattattttttatttttttgaaggaattgatacaaaattataaacataacgt 11869269  T
Q  492 accacaaaccaatattaatttataatcttcattttggtcaactc 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11869268 accacaaaccaatattaatttataatcttcattttggtcaactc 11869225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 11876789 - 11876660
Alignment:
Q  87 attacacaaacctaaagcttcgccaacaggaacataacccaaagagagaaattcatggttttggatagaacaaaaactccatcatcattgggcacacata 186  Q
    |||| |||||||||||||||||||||| ||| || ||| ||| |||| ||||| |||||||||| ||||| ||||||| |||||||||  | ||||||||    
T  11876789 attaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatcatcatcagacacacata 11876690  T
Q  187 tatcaatgcttatataattcatatattgcg 216  Q
    || ||||||||||| |||||||| ||||||    
T  11876689 taccaatgcttataaaattcatagattgcg 11876660  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 11891796 - 11891667
Alignment:
Q  87 attacacaaacctaaagcttcgccaacaggaacataacccaaagagagaaattcatggttttggatagaacaaaaactccatcatcattgggcacacata 186  Q
    |||| |||||||||||||||||||||| ||| || ||| ||| |||| ||||| |||||||||| ||||| ||||||| |||||||||  | ||||||||    
T  11891796 attaaacaaacctaaagcttcgccaactggagcagaactcaaggagataaatttatggttttggctagaagaaaaacttcatcatcatcagacacacata 11891697  T
Q  187 tatcaatgcttatataattcatatattgcg 216  Q
    || ||||||||||| |||||||| ||||||    
T  11891696 taccaatgcttataaaattcatagattgcg 11891667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 11876152 - 11876022
Alignment:
Q  235 ttatgtcaaatatttttgactcggttgataagaagttaacactctcatctcttttgatagttgatctgtatgtgtaactctataaacattctttaacttt 334  Q
    ||||||| | |||||||||||| |||| ||| |||||||| |||||| |||| | ||||| |||| |||| ||||| ||||||||| | |||||||||||    
T  11876152 ttatgtcgattatttttgactcagttggtaacaagttaactctctcacctctat-gatagctgatttgtaagtgtacctctataaagactctttaacttt 11876054  T
Q  335 gaggtccggc-ttcaattcacttactcttttt 365  Q
    |||||||||| |||||||||||||||||||||    
T  11876053 gaggtccggctttcaattcacttactcttttt 11876022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 365
Target Start/End: Complemental strand, 11891159 - 11891029
Alignment:
Q  235 ttatgtcaaatatttttgactcggttgataagaagttaacactctcatctcttttgatagttgatctgtatgtgtaactctataaacattctttaacttt 334  Q
    ||||||| | |||||||||||| |||| ||| |||||||| |||||| |||| | ||||| |||| |||| ||||| ||||||||| | |||||||||||    
T  11891159 ttatgtcgattatttttgactcagttggtaacaagttaactctctcacctctat-gatagctgatttgtaagtgtacctctataaagactctttaacttt 11891061  T
Q  335 gaggtccggc-ttcaattcacttactcttttt 365  Q
    |||||||||| |||||||||||||||||||||    
T  11891060 gaggtccggctttcaattcacttactcttttt 11891029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 11875884 - 11875807
Alignment:
Q  349 attcacttactctttttatcataaa-taaaaaattatttctttggccggtaacatagttgttggaaccaatatttaaa 425  Q
    ||||||||||||||||||||||||| |||| |||  |||||||||| ||||| |||||||||||||| ||||||||||    
T  11875884 attcacttactctttttatcataaaataaagaatattttctttggctggtaaaatagttgttggaactaatatttaaa 11875807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 11890891 - 11890814
Alignment:
Q  349 attcacttactctttttatcataaa-taaaaaattatttctttggccggtaacatagttgttggaaccaatatttaaa 425  Q
    ||||||||||||||||||||||||| |||| |||  |||||||||| ||||| |||||||||||||| ||||||||||    
T  11890891 attcacttactctttttatcataaaataaagaatattttctttggctggtaaaatagttgttggaactaatatttaaa 11890814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 533
Target Start/End: Complemental strand, 11875774 - 11875736
Alignment:
Q  495 acaaaccaatattaatttataatcttcattttggtcaac 533  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  11875774 acaaacccattttaatttataatcttcattttggtcaac 11875736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 533
Target Start/End: Complemental strand, 11890781 - 11890743
Alignment:
Q  495 acaaaccaatattaatttataatcttcattttggtcaac 533  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  11890781 acaaacccattttaatttataatcttcattttggtcaac 11890743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 32931158 - 32931052
Alignment:
Q  67 tcacttaatcattatatggaattacacaaacctaaagcttcgccaacaggaacataacccaaa-gagagaaattcatggttttggatagaacaaaaactc 165  Q
    |||||||| |||| ||| |||||| |||||||||||||||| |||||||||||| |||  ||| |||| ||||| |||||||||| ||||||||||  ||    
T  32931158 tcacttaaccattctatagaattaaacaaacctaaagcttcaccaacaggaacaaaacataaaggagaaaaatttatggttttggctagaacaaaagttc 32931059  T
Q  166 catcatc 172  Q
    |||||||    
T  32931058 catcatc 32931052  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 49731160 - 49731294
Alignment:
Q  67 tcacttaatcattatatggaattacacaaacctaaagcttcgccaacaggaacataacccaaa-gagagaaattcatggttttggatagaacaaaaactc 165  Q
    |||||||| |||| ||| | |||| |||||||||||||||| |||||||||| | | |  ||| |||||||| |||| ||||||| ||||||||||  |     
T  49731160 tcacttaaccattctatagtattaaacaaacctaaagcttcaccaacaggaagagagcataaaggagagaaactcattgttttggttagaacaaaagatt 49731259  T
Q  166 catcatcattgggcacacatatatcaatgcttata 200  Q
    ||||||| | | |||||||||||||||||| ||||    
T  49731260 catcatcgtcgtgcacacatatatcaatgcatata 49731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 27882519 - 27882407
Alignment:
Q  61 tgcatgtcacttaatcattatatggaattacacaaacctaaagcttcgccaacaggaacataacccaaa-gagagaaattcatggttttggatagaacaa 159  Q
    |||||||||||||| |||| ||||| |||| |||||| ||||||||| |||| ||||||  |||  ||| |||||||||||||| |||||| || || ||    
T  27882519 tgcatgtcacttaaccattttatggcattaaacaaacataaagcttcaccaataggaactgaacataaaggagagaaattcatgattttggctaaaaaaa 27882420  T
Q  160 aaactccatcatc 172  Q
    || ||||| ||||    
T  27882419 aagctccaccatc 27882407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 28980473 - 28980510
Alignment:
Q  87 attacacaaacctaaagcttcgccaacaggaacataac 124  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  28980473 attaaacaaacctaaagcttcaccaacaggaacataac 28980510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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