View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_21 (Length: 520)
Name: NF20620_low_21
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 332 - 501
Target Start/End: Original strand, 8315998 - 8316174
Alignment:
| Q |
332 |
accatcatagcatgtgttgattattatattagactatgattcagcgaca-------ccagacacgatatggacattactgataatatgatataacgcctg |
424 |
Q |
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| T |
8315998 |
accatcacagcatgtgttgattattatattagactatgattcaccgacaccagacaccagacacgacatggacattactgataatatgatataaagcctg |
8316097 |
T |
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| Q |
425 |
aacattcctaatacaggagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaa |
501 |
Q |
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| T |
8316098 |
aacattcctaatacatgagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaatttaagtttcaaa |
8316174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 8315742 - 8315913
Alignment:
| Q |
75 |
tggggttaacacgttttttagataaaaatggcccaaattggnnnnnnnnnnnnnacaaaatgaatttggtaaaaacaaaagagtctcaagtttgaaccct |
174 |
Q |
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| T |
8315742 |
tggggttaacccgttttttagataaaaatggcccaaattggttttttagtttttacaaaatgaatttggcaaaaacaaaagagtctcaagtttgaaccct |
8315841 |
T |
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| Q |
175 |
gcggcgtcacagtctcaaattctgaacgagatatgaccgatcaggtattattgacttgtcaatcattctatag |
247 |
Q |
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| T |
8315842 |
gcggcgtcacagtctcaaattctgaacgaga-atgaccgatcaggtattattgacttgtcaatcattctatag |
8315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8315654 - 8315687
Alignment:
| Q |
1 |
caatctggattagtaaatttggaggggtataatt |
34 |
Q |
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| T |
8315654 |
caatctggattagtaaatttggaggggtataatt |
8315687 |
T |
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