View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_22 (Length: 502)
Name: NF20620_low_22
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 50460442 - 50460133
Alignment:
| Q |
7 |
tccaatccaccgagtcgtgttctcgacgataaggactcaaaactattcgctcaagtttctgggcatatttcagagcattcattacaaactcaatttcata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460442 |
tccaatccaccgagtcgtgttctcgacgataaggactcaaaactattcgctcatgtttctgggcatatttcagagcattcattacaaactcaatttcata |
50460343 |
T |
|
| Q |
107 |
ccaattgccaacacagcctcccaattcaataactctgatctcgtcatgagagcatatttcaacatctttgacaacnnnnnnnnnnnnnaattatctttgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50460342 |
ccaattgccaacacagcctcccaattcaataactctgatctcgtcatgagagcatatttcaacatctttgacaac-tttttgttttttaattatctttgg |
50460244 |
T |
|
| Q |
207 |
atatgtgagctatcaaaaagataaatcaaaataagagtggtagttaaaattgacaaatttataccaatgaatgcaaatcaatatgtctaagaaaaatgtc |
306 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460243 |
atatgtgagctatcagaaagagaaatcaaaataggagtggtagttaaaattgacaaatttataccaatgaatgcaaatcaatatgtctaagaaaaatgtc |
50460144 |
T |
|
| Q |
307 |
taaactaataa |
317 |
Q |
| |
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||||||||||| |
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| T |
50460143 |
taaactaataa |
50460133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 311 - 487
Target Start/End: Complemental strand, 50459972 - 50459796
Alignment:
| Q |
311 |
ctaataagagagttattgttgaaaatagattattaaaatgagtattcctagcactaatctaaaagtaaaatacttccaatgaagagttcaactcctgaaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50459972 |
ctaataagagagttattgttgaaaatagattattaaaatgagtattcctagcactaatctaaatgtaaaatacttccaatgaagagttcaactcctgaaa |
50459873 |
T |
|
| Q |
411 |
tcaaaggttagatttggaaagataatggacaggaaagtgcattaaactcaattggtgttagcataataggatgtttt |
487 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50459872 |
tcaaaggttagatttggaaagataatggacaggaaagtgcattaaactcaattggtgttagcataataggatgtttt |
50459796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 48106946 - 48107076
Alignment:
| Q |
42 |
ctcaaaactattcgctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactc |
141 |
Q |
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|||| ||||||| |||||||||| ||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48106946 |
ctcacaactatttgctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcctcctaattcaataactt |
48107045 |
T |
|
| Q |
142 |
tgatctcgtcatgagagcatatttcaacatc |
172 |
Q |
| |
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| | |||||||||||| || |||||||||| |
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| T |
48107046 |
ttacttcgtcatgagagaatgtttcaacatc |
48107076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 47050907 - 47051040
Alignment:
| Q |
39 |
ggactcaaaactattcgctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataa |
138 |
Q |
| |
|
|||||||| |||||| ||||||| || |||||| |||| ||| ||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
47050907 |
ggactcaacactatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataa |
47051006 |
T |
|
| Q |
139 |
ctctgatctcgtcatgagagcatatttcaacatc |
172 |
Q |
| |
|
| || || || |||||||| |||| |||||||| |
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| T |
47051007 |
cccttatatcatcatgagataatatctcaacatc |
47051040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 48452879 - 48452992
Alignment:
| Q |
56 |
ctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatctcgtcatga |
155 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| || || ||||| |
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| T |
48452879 |
ctcaagtttgtgggcatattttaa--cattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataactccgaccttttcatgt |
48452976 |
T |
|
| Q |
156 |
gagcatatttcaacat |
171 |
Q |
| |
|
|||||||| ||||||| |
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| T |
48452977 |
gagcatatatcaacat |
48452992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 48895828 - 48895727
Alignment:
| Q |
71 |
atatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatc-tcgtcatgagagcatatttcaac |
169 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||| | | |||||||||||| || ||||||| |
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| T |
48895828 |
atattttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataa-tcttaacttcgtcatgagagaatgtttcaac |
48895730 |
T |
|
| Q |
170 |
atc |
172 |
Q |
| |
|
||| |
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|
| T |
48895729 |
atc |
48895727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 47929519 - 47929426
Alignment:
| Q |
47 |
aactattcgctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataact |
140 |
Q |
| |
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||||||| ||||||||| || |||||||| | | ||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
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| T |
47929519 |
aactattttctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataact |
47929426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 48105967 - 48106083
Alignment:
| Q |
55 |
gctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatctcgtcatg |
154 |
Q |
| |
|
|||||||||| || ||||||| | | ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||| | | || |||||| |
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|
| T |
48105967 |
gctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataacttttacct-gtcatg |
48106065 |
T |
|
| Q |
155 |
agagcatatttcaacatc |
172 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
48106066 |
agataatatttcaacatc |
48106083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 39403663 - 39403547
Alignment:
| Q |
42 |
ctcaaaactattcgctcaagtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactc |
141 |
Q |
| |
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|||| ||||||| |||| ||||| ||||||||||| ||| ||||| | ||||||||||||||| |||||||||||||||| ||| | |||||||||||| |
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| T |
39403663 |
ctcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataactt |
39403564 |
T |
|
| Q |
142 |
tgatctcgtcatgagag |
158 |
Q |
| |
|
| | ||| ||||||||| |
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|
| T |
39403563 |
ttagctcatcatgagag |
39403547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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