View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_23 (Length: 475)
Name: NF20620_low_23
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 2831934 - 2832378
Alignment:
| Q |
19 |
gtaacgtcggacccactagacgtccggttgattattgctttggaagagacatcctgttatgcagataaacaggaaacttaatcattttcattttcacatg |
118 |
Q |
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| T |
2831934 |
gtaacgtcggacccactagacgtcctgttgattattgctttggaagagacatcctgttatgcagataaacaggaaacttaatcattttcattttcacatg |
2832033 |
T |
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| Q |
119 |
ttttttactttcggtgcaaaagaacaaaagaacaaaagaaacagatatattgtgtattaagcaaggacaagccagttgaatatataccaacaaaaatttc |
218 |
Q |
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| T |
2832034 |
ttttttactttcggtgcaaa--------agaacaaaagaaacagatatattgtgtactaagcaaggacaagccagttgaatatataccaacaaaaatttc |
2832125 |
T |
|
| Q |
219 |
aatcataaagcatgataatatcttatataccaaccacgagcagctccatcttcatcttttcgaaaattcaaaatatagcaaaaagcaatacactgaaaga |
318 |
Q |
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| T |
2832126 |
aatcataaagcatgataatatcttatataccaaccacgagcagctccatcttcatcttttcgaaaattcaaaatatagcaaaaagcaatacactgaaaga |
2832225 |
T |
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| Q |
319 |
agtcacgagaatttttagcctgaatgagtgaaatgcttacttcagaaaaataacttttagtgctttcatctgtatcaccgttgctgaattggtttcttga |
418 |
Q |
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| T |
2832226 |
agtcacgagaatttttagcctgaatgagtgaaatgcttacttcagaaaaataacttttagtgctttcatctgtatcaccgttgctgaattggtttcttga |
2832325 |
T |
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| Q |
419 |
gctcatatcatcgaattttagttttctatcttcacattcatcttcctctctgc |
471 |
Q |
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| T |
2832326 |
gctcatatcatcgaattttagttttatatcttcacattcatcttcctctctgc |
2832378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 40798328 - 40798199
Alignment:
| Q |
341 |
aatgagtgaaatgcttacttcagaaaaataacttttagtgctttcatctgtatcaccgttgctgaattggtttcttgagctcatatcatcgaattttagt |
440 |
Q |
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||||||||||| |||||||||||| ||| ||||||||||| | ||||| |||| || |||| || | | | ||| ||||| |||||| || |||| || |
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| T |
40798328 |
aatgagtgaaac-cttacttcagaagaatcacttttagtgcatccatctatatctccagtgcttaaataggtccttaagctcctatcattgagtttttgt |
40798230 |
T |
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| Q |
441 |
tttctatcttcacattcatcttcctctctgc |
471 |
Q |
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| T |
40798229 |
ttggcatcttcacattcctcttcctctctgc |
40798199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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