View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_25 (Length: 465)
Name: NF20620_low_25
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 8946387 - 8946141
Alignment:
| Q |
18 |
gtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtgacgatggagatattattgaacaatatactaatgtgtatcgagc |
117 |
Q |
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| T |
8946387 |
gtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtgacgatggagatattattgaacaatattcttatgtgtatcaagc |
8946288 |
T |
|
| Q |
118 |
aaacgttgttggagctgttttcatatcaaatatatcaaatttcgacttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946287 |
aaacgttgttggagctgttttcatatcaaatatatcaaattttgatttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatcttt |
8946188 |
T |
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| Q |
218 |
atcagtccaatagatggagaaatcaccaaatcgtacatcaagaataa |
264 |
Q |
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| T |
8946187 |
attagtccaatagatggagaaatcaccaaatcatacatcaagaataa |
8946141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 315 - 446
Target Start/End: Original strand, 40636435 - 40636566
Alignment:
| Q |
315 |
aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
414 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40636435 |
aatccgaagttatatcagaaacaatcataaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
40636534 |
T |
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| Q |
415 |
ttctgaagaaacctatcagcacacctctgctc |
446 |
Q |
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| T |
40636535 |
ttctgaagaaatctatcagcacacctctgctc |
40636566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 284 - 446
Target Start/End: Original strand, 41957091 - 41957253
Alignment:
| Q |
284 |
agtaatgcgacacggatgagagagaccacgcaatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaat |
383 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41957091 |
agtaatgcgacacggatgagagaaaccacgcaatacgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcatgatatttgcaaat |
41957190 |
T |
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| Q |
384 |
cctctccataacatctctactcttagcactattctgaagaaacctatcagcacacctctgctc |
446 |
Q |
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| T |
41957191 |
cctctccataacatctctactcttagcactattatgaagaaacctatcagcacacctctgctc |
41957253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 315 - 446
Target Start/End: Original strand, 5598192 - 5598323
Alignment:
| Q |
315 |
aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
414 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5598192 |
aatccaaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
5598291 |
T |
|
| Q |
415 |
ttctgaagaaacctatcagcacacctctgctc |
446 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
5598292 |
ttttgaagaaacctatcagcacacctctgctc |
5598323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 315 - 446
Target Start/End: Original strand, 25548113 - 25548244
Alignment:
| Q |
315 |
aatccgaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
414 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25548113 |
aatccaaagttatatcagaaacaatcacaaagaaaatgagctagactcagcctcaagatatttgcaaatcctctccataacatctctactcttagcacta |
25548212 |
T |
|
| Q |
415 |
ttctgaagaaacctatcagcacacctctgctc |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
25548213 |
ttctgaagaaacctatcagcacacctctgctc |
25548244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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