View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_26 (Length: 461)
Name: NF20620_low_26
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 188 - 446
Target Start/End: Original strand, 29297481 - 29297739
Alignment:
| Q |
188 |
ttcagattgtaaaatacaagagaactctttatttaaggtactctttcttgactggatcattacctttgcttgttatatggcccgttcttctctaagcatg |
287 |
Q |
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| T |
29297481 |
ttcagattgtaaaatacaagagaactctttatttaaggtactctttcttgactggatcattacctttgcttgttatatggcccgttcttctccaagtatg |
29297580 |
T |
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| Q |
288 |
tgaaaatattttcttggaataaaaatgcttttatcaaaacaaatcctcacgtcaaaatttatgttttataatttgttacaaagggcgtttttgcacaaaa |
387 |
Q |
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| T |
29297581 |
tgaaaatattttcttggaatgaaaatgcttttatcaaaacaaatcctcacgtcaaaatttatgttttataatttgttacaaagagcgtttttgcacaaaa |
29297680 |
T |
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| Q |
388 |
ggaaaaactcatctgaaaaacagtataaaagctactgtacatttgtattatttgtatgt |
446 |
Q |
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| T |
29297681 |
ggaaaaactcatctgaaaaacagtataaaagctactgtacatttgtattatttgtatgt |
29297739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 29297372 - 29297434
Alignment:
| Q |
9 |
attattcttgactctttgtaggcaaggtttcatcagatcttttattaatatggctggaatacc |
71 |
Q |
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| T |
29297372 |
attagtctcgactctttgtaggcaaggtttcatcagatcttttattaatatggctggaatacc |
29297434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 29297433 - 29297484
Alignment:
| Q |
110 |
ccaaatatggactaccaagacactcaaattgtcaatgtatggttgaaattca |
161 |
Q |
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| T |
29297433 |
ccaaatatggaccaccaagacactcaaattgtcaatgtatggttgaaattca |
29297484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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