View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_27 (Length: 459)
Name: NF20620_low_27
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 43818822 - 43819141
Alignment:
| Q |
9 |
acatcatctagatcaagagcttcagaagcataagccatagcttgaatctgcatcttagttggcatgtcagtatcttctatcatagctttaccttccaaca |
108 |
Q |
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| T |
43818822 |
acatcatatagatcaagagcttcagaagcataagccatagcttgaatctgcatcttagttggcatgtcagtatcttctatcatagctttaccttccaaca |
43818921 |
T |
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| Q |
109 |
tctttg-----aatgttaaaccttatctccaaggtctgaaaagagatccaaacattgatatataaannnnnnnnctttctattttgaagactaaggaaag |
203 |
Q |
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| T |
43818922 |
tctttgaagttaatgttaaaccttatctcaaaggtctgaaaagagatccaaacattgatatataaa--ttatttctttctattttgaagactaaggaaag |
43819019 |
T |
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| Q |
204 |
aaaagaagatagactttttaaaatgacacggnnnnnnncatgattgcattccttatgttaagggaatgacttaaattaaaacaccatgtcacgctagcac |
303 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43819020 |
gaaagaagatagac--tttaaaatgacacggaaaaaaacatgattgcattccttatgttaagggaatgacttaaattaaaacaccatgtcacgctagcac |
43819117 |
T |
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| Q |
304 |
taatactatatgcctaaatggcac |
327 |
Q |
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|||||||||||||||||||||||| |
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| T |
43819118 |
taatactatatgcctaaatggcac |
43819141 |
T |
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