View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_33 (Length: 402)
Name: NF20620_low_33
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 31601226 - 31600835
Alignment:
| Q |
1 |
aacaagcctctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601226 |
aacaagcctctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaa |
31601127 |
T |
|
| Q |
101 |
ggactgtgactttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601126 |
ggactgtgactttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaat |
31601027 |
T |
|
| Q |
201 |
ttaatggagcttgcccagacaatttttcaaaagcatccttcaaagaaacaagacttccttcctttcccaatgcatccaaaatatcactcttgttctcaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601026 |
ttaatggagcttgcccagacaatttttcaaaagcatccttcaaagaaacaatacttccttcctttcccaatgcatccaaaatatcactcttgttctcaga |
31600927 |
T |
|
| Q |
301 |
atcctcgcgatcatcatcatcattgaattccagttcaccctttgcgtagcttcctatgcaagcctt---ctaccttttgttcagtgacagaa |
389 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31600926 |
atcctcgtgatcatcatcatcattgaattccagttcaccctttgcgtagcttcctatgcaagccttctactaccttttgttcagtgacagaa |
31600835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 49776816 - 49776563
Alignment:
| Q |
13 |
tccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgtgactt |
112 |
Q |
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||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| | | ||| || |
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| T |
49776816 |
tccctccttgactccatcaaatacacgaagttgagctgcagcaggcagcatagcataaaggggtagaacaaagagtgcacctggagaggaatcatgattt |
49776717 |
T |
|
| Q |
113 |
tctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatggagctt |
212 |
Q |
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||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| |||| |
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| T |
49776716 |
tctctagctattttctccctgccaacttttgattggtctaaactgtcttctgtattca------------------catttgaggaacttaatgttgctt |
49776635 |
T |
|
| Q |
213 |
gcccagacaatttttcaaaagcatccttcaaagaaacaagacttccttcctttcccaatgcatccaaaatat |
284 |
Q |
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|||||||||| |||||||||||| ||||||| ||| ||||||||||||| ||||| ||| |||||| ||||| |
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| T |
49776634 |
gcccagacaagttttcaaaagcagccttcaatgaagcaagacttccttcatttcctaatacatccacaatat |
49776563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 7992466 - 7992724
Alignment:
| Q |
8 |
ctctttccctccttaactccttcaaatagacgaagttgagctgcagcaggcagcacagcgtaaagctctagaacgaagagtgcacctggagaaggactgt |
107 |
Q |
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|||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| | | || |
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| T |
7992466 |
ctctctccctccttgactccatcaaatacacgaagttgagctgcagcaggcagcatagcataaagtggtagaacaaagagtgcacctggagaggaatcgt |
7992565 |
T |
|
| Q |
108 |
gactttctctagctatcttctcactgcaaacttttgatttgtctaaaccctcttctgtattcacagaaaatgtcgtcatctcatttgaggaatttaatgg |
207 |
Q |
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|| ||||||||||||| ||||| |||| |||||| |||| ||||||||| ||||||||||||| ||||||||||| |||||| |
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| T |
7992566 |
gattttctctagctattttctccctgccaactttcgattggtctaaaccatcttctgtattca------------------catttgaggaacttaatgt |
7992647 |
T |
|
| Q |
208 |
agcttgcccagacaatttttcaaaagcatccttcaaagaaacaagacttccttcctttcccaatgcatccaaaatat |
284 |
Q |
| |
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|||||||||||||| ||||| |||||| ||||||| ||| ||||||||||||| ||||| || |||||| ||||| |
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| T |
7992648 |
tgcttgcccagacaagttttcgaaagcagccttcaatgaagcaagacttccttcatttcctaagacatccacaatat |
7992724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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