View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_35 (Length: 397)
Name: NF20620_low_35
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22553407 - 22553674
Alignment:
| Q |
1 |
tcaacaaaaacttgcaagccaccaacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553407 |
tcaacaaaaacttgcaagccaccaacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggttttt |
22553506 |
T |
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| Q |
101 |
gacatggtggataataattaagcctcattattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctc |
200 |
Q |
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| T |
22553507 |
gacatggtgggtaataattaagtctcattattgatttattctcttcaaaaaaatctctaaaacaatcttttccaactccaagactcattccaagaagctc |
22553606 |
T |
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| Q |
201 |
cattatccccaaagaaagtgtactcattgcttcacaatacttttggtaaacctccctattaatttacc |
268 |
Q |
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| T |
22553607 |
cattatccccaaagaaagtgtactcattgcttcacaatacttttggtaaacctccctattaatttacc |
22553674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 46103475 - 46103258
Alignment:
| Q |
1 |
tcaacaaaaacttgcaagccaccaacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggttttt |
100 |
Q |
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|||||| |||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
46103475 |
tcaacataaacttgcaagccacctacttgatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggttttt |
46103376 |
T |
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| Q |
101 |
gacatggtggataataattaagcctcattattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctc |
200 |
Q |
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| T |
46103375 |
gacaagtaggatagtaattgagcctcattattgaactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctc |
46103276 |
T |
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| Q |
201 |
cattatccccaaagaaag |
218 |
Q |
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|||||| || |||||||| |
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| T |
46103275 |
cattatacctaaagaaag |
46103258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 12872603 - 12872693
Alignment:
| Q |
23 |
caacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggata |
113 |
Q |
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||||||| |||||||| ||||||||||| || || || |||||||| |||||||||||||||| | |||||| |||| ||||||||||| |
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| T |
12872603 |
caacttgatcttggtggagaatggttaaggaagtagggtcacaatggggtccagttcctaaagctaaatcaggatttttgcatggtggata |
12872693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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