View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20620_low_39 (Length: 381)
Name: NF20620_low_39
Description: NF20620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20620_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 12052281 - 12052652
Alignment:
| Q |
1 |
taaaagtattttcttttaagataataaataagaaatgcatgatgaaaagtatagaagaaagataaagagataaattgcgtaaaagatttatttgattgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12052281 |
taaaagtattttcttttaagataataaataagaaatgcatgatgaaaagtatagaagaaagataaagagataaattgcgtaaaagatttgtttgattgat |
12052380 |
T |
|
| Q |
101 |
tgcatgtcttaaataatatgtgcaaatttgggtttttgtgacaaaacactagtcctaccggccatacacacccttttaagttcaatttctatgcaaatct |
200 |
Q |
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| T |
12052381 |
tgcatgtcttaaataatatgtacaaatttgggtttttgtgacaaaacactagtcctaccggccatacacacccttttaagttcaatttctatgcaaatct |
12052480 |
T |
|
| Q |
201 |
tcaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacccacaaatgaaaccatttcc |
300 |
Q |
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| T |
12052481 |
ccaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacccacaaatgaaaccatttcc |
12052580 |
T |
|
| Q |
301 |
actggagattccatcatcgtgcttctttttcgtcatgtcttttttccattcttatatctctctcccctttgc |
372 |
Q |
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| T |
12052581 |
actggagattccatcatcgtgcttctttttcgtcatgtcttttttccattcttatatctctctcccccttgc |
12052652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 52953490 - 52953373
Alignment:
| Q |
182 |
tcaatttctatgcaaatcttcaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacc |
281 |
Q |
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||||||||| |||||| || ||||| ||||| ||||||| || |||||| | ||||| | |||||||| || |||||||||||||||| ||||||||| |
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| T |
52953490 |
tcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcagaagatttctcacaagaatgacc |
52953391 |
T |
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| Q |
282 |
cacaaatgaaaccatttc |
299 |
Q |
| |
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|||| ||||||||||||| |
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| T |
52953390 |
cacagatgaaaccatttc |
52953373 |
T |
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